View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4216_low_1 (Length: 529)

Name: NF4216_low_1
Description: NF4216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4216_low_1
NF4216_low_1
[»] chr6 (3 HSPs)
chr6 (21-253)||(1041277-1041508)
chr6 (327-518)||(11146325-11146520)
chr6 (111-258)||(1045254-1045400)
[»] chr7 (5 HSPs)
chr7 (327-518)||(4475355-4475546)
chr7 (327-518)||(39665429-39665623)
chr7 (327-518)||(28619855-28620039)
chr7 (327-518)||(38693930-38694114)
chr7 (415-518)||(9118010-9118106)
[»] chr2 (2 HSPs)
chr2 (327-518)||(41320915-41321106)
chr2 (327-518)||(13855595-13855789)
[»] chr8 (1 HSPs)
chr8 (327-518)||(6643896-6644090)
[»] chr3 (1 HSPs)
chr3 (328-518)||(7548445-7548628)
[»] chr4 (1 HSPs)
chr4 (327-518)||(3996599-3996794)
[»] chr1 (1 HSPs)
chr1 (327-518)||(23396531-23396725)
[»] chr5 (1 HSPs)
chr5 (368-518)||(5253012-5253162)
[»] scaffold0416 (2 HSPs)
scaffold0416 (327-419)||(5769-5856)
scaffold0416 (481-518)||(5876-5913)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 1041277 - 1041508
Alignment:
Q  21 tatactcttaatattatgtggtaaccatttttgtgcattcacagagttaagttttgggttatatatttccaaaattggtagtcttctaagtttgtagatt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  1041277 tatactcttaatattatgtggtaaccatttttgtgcattcacagagttaagttttgggttgtatatgaccaaaattggtagtcttctaagtttgtagatt 1041376  T
Q  121 ggacaatgttgaagtgatagaccaaacgaatgtggtgtgtataaatcattgacacataaaaagaatgttattcactctattattcttttcaaaagaattg 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1041377 ggacaatgttgaagtgatcgaccaaacgaatgtggtgtgtataaatcattgacacat-aaaagaatgttattcactctattattcttttcaaaagaattg 1041475  T
Q  221 aaagaaaatagttcaataagaagagaagatgtt 253  Q
    |||||||||||||||||||||||||||||||||    
T  1041476 aaagaaaatagttcaataagaagagaagatgtt 1041508  T

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Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 11146325 - 11146520
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||     
T  11146325 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaattcttttcacatattaacaatatgttatgcatttttcttatac 11146424  T
Q  427 ttttt----tatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||    ||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  11146425 ttttttttatatattgttatgtaatttgtatttctctttataccttctaccatttaaaacaatcgtgtataatcatacaaatttattttatttcat 11146520  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 1045254 - 1045400
Alignment:
Q  111 tttgtagattggacaatgttgaagtgatagaccaaacgaatgtggtgtgtataaatcattgacacataaaaagaatgttattcactctattattcttttc 210  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||    
T  1045254 tttgtagattggacaatgttgatgtgatcgaccaaacaaatgtggtgtgtataaatcattggcgcataaaa-gaatgttattcactctatcattcttttc 1045352  T
Q  211 aaaagaattgaaagaaaatagttcaataagaagagaagatgttagagt 258  Q
    ||||||| |||| | || |||||| |||||||||||||||||||||||    
T  1045353 aaaagaaatgaatgtaagtagttctataagaagagaagatgttagagt 1045400  T

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Target: chr7 (Bit Score: 180; Significance: 6e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 4475355 - 4475546
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4475355 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatac 4475454  T
Q  427 ttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  4475455 ttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaatttttttttatttcat 4475546  T

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Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 327 - 518
Target Start/End: Complemental strand, 39665623 - 39665429
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  39665623 aagaaataatatttagaattttgttgttgacaaaaaaatcaaaacttatcaactaaatttgtttcataaattaacaatatgttatgcatttttcttatac 39665524  T
Q  427 ttttt---tatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||   ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39665523 tttttttatatattgttatgtaatttgtatttctctttataccttctgccatttaaaacaatcgtgtataatcatacaaatttattttatttcat 39665429  T

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Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 28619855 - 28620039
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  28619855 aagaaataatatttagaattttgttgttgataaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatattatgcatttttcttatac 28619954  T
Q  427 ttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28619955 ttttttatatggttatgtaatttgtatttct-------ccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 28620039  T

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Target: chr7; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 38693930 - 38694114
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  38693930 aagaaataatatttagaattttgttgttgacaaaaaagccaaaacttatcaactaaatttgtttcacaaattaacaatatattatgcatttttcttatac 38694029  T
Q  427 ttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38694030 ttttttatatggttatgtaatttgtatttct-------ccttatgccatttaaattaatcgtgtataatcatacaaatttattttatttcat 38694114  T

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Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 415 - 518
Target Start/End: Original strand, 9118010 - 9118106
Alignment:
Q  415 tttttcttatagttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatt 514  Q
    ||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9118010 tttttcttatacttttttatatggttatgtaatttgtatttctc-------cttatgccatttaaaataatcgtgtataatcatacaaatttattttatt 9118102  T

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Target: chr2 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 41320915 - 41321106
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41320915 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatac 41321014  T
Q  427 ttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41321015 ttttttatatggttatgtaatctgtaattctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 41321106  T

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Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 327 - 518
Target Start/End: Complemental strand, 13855789 - 13855595
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13855789 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatac 13855690  T
Q  427 ttttt---tatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||   ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  13855689 tttttttatatattgttatgtaatttgtatttctctttataccttctgccatttaaaacaatcatgtataatcatacaaatttattttatttcat 13855595  T

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Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 327 - 518
Target Start/End: Complemental strand, 6644090 - 6643896
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6644090 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaatttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatac 6643991  T
Q  427 ttttt---tatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    |||||   ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  6643990 tttttttatatattgttatgtaatttgtatttctctttataccttctgtcatttaaaacaatcgtgtataatcatacaaatttattttatttcat 6643896  T

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Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 328 - 518
Target Start/End: Complemental strand, 7548628 - 7548445
Alignment:
Q  328 agaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatagt 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  7548628 agaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatattatgcatttttcttatact 7548529  T
Q  428 tttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7548528 tttttatatggttatgtaatttgtatttctct-------ttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 7548445  T

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Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 3996599 - 3996794
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatag 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  3996599 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaataggttatgcatttttcttatac 3996698  T
Q  427 ttttttatatg----gttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    ||||||||||     || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3996699 ttttttatatatattgtaatgtaatttgtatttctctttataccttctgccatttaaaacaattgtgtataatcatacaaatttattttatttcat 3996794  T

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Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 23396531 - 23396725
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttata- 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  23396531 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaataagttatgcatttttcttatac 23396630  T
Q  426 --gttttttatatggttatgtaatttgtatttctctttataccttatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
       |||| ||||| |||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  23396631 cttttttatatattgttatgtaatttttatttctctttataccttctaccatttaaaacaatcgtgtataatcatacaaatttattttatttcat 23396725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 368 - 518
Target Start/End: Complemental strand, 5253162 - 5253012
Alignment:
Q  368 aaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatagttttttatatggttatgtaatttgtatttctctttatacct 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5253162 aaacttatcaactaaatttgtttcacaaattaacaatatgttatgcatttttcttatacttttttacatggttatgtaatttgtatttctctttatacct 5253063  T
Q  468 tatgccatttaaaataatcgtgtataatcatacaaatttattttatttcat 518  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5253062 tacgccatttaaaataattgtgtataatcatacaaatttattttatttcat 5253012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 5769 - 5856
Alignment:
Q  327 aagaaataatatttagaattttgttgttgacaaaaaagtcaaaacttatcaactaaatttgtttcacaaattaacaatatgttatgcattttt 419  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5769 aagaaataatatttagaattttgttgttgacaaaaaa-----aacttatcaactaaatttgtttcacaaattaacaatatattatgcattttt 5856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 518
Target Start/End: Original strand, 5876 - 5913
Alignment:
Q  481 ataatcgtgtataatcatacaaatttattttatttcat 518  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5876 ataatcgtgtataatcatacaaatttattttatttcat 5913  T

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