View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4216_low_12 (Length: 211)

Name: NF4216_low_12
Description: NF4216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4216_low_12
NF4216_low_12
[»] chr6 (9 HSPs)
chr6 (17-193)||(22824573-22824749)
chr6 (17-193)||(16273265-16273440)
chr6 (19-193)||(28321341-28321514)
chr6 (87-193)||(16274712-16274818)
chr6 (87-193)||(22825783-22825889)
chr6 (87-193)||(28319969-28320076)
chr6 (37-82)||(16274500-16274545)
chr6 (37-82)||(28320242-28320287)
chr6 (37-82)||(22825571-22825616)
[»] chr8 (1 HSPs)
chr8 (17-193)||(31973170-31973345)
[»] chr3 (9 HSPs)
chr3 (17-193)||(32967997-32968172)
chr3 (17-193)||(42394549-42394724)
chr3 (17-192)||(10024389-10024563)
chr3 (79-193)||(10023185-10023299)
chr3 (87-193)||(42396012-42396118)
chr3 (119-193)||(32969797-32969870)
chr3 (37-82)||(42395800-42395845)
chr3 (37-82)||(10023458-10023503)
chr3 (37-82)||(32969546-32969591)
[»] chr2 (7 HSPs)
chr2 (17-193)||(39832986-39833161)
chr2 (17-193)||(19046952-19047127)
chr2 (23-192)||(26239911-26240079)
chr2 (87-193)||(19045577-19045683)
chr2 (88-193)||(39834721-39834826)
chr2 (37-82)||(19045850-19045895)
chr2 (37-82)||(39834508-39834553)
[»] chr1 (3 HSPs)
chr1 (17-193)||(29995926-29996101)
chr1 (87-193)||(29997373-29997479)
chr1 (37-82)||(29997161-29997206)
[»] scaffold0038 (3 HSPs)
scaffold0038 (17-193)||(112450-112625)
scaffold0038 (87-193)||(111075-111182)
scaffold0038 (37-82)||(111348-111393)
[»] scaffold0061 (1 HSPs)
scaffold0061 (17-193)||(40901-41076)
[»] scaffold0017 (1 HSPs)
scaffold0017 (17-193)||(157709-157884)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 22824573 - 22824749
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22824573 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 22824672  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22824673 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 22824749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 16273265 - 16273440
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273265 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 16273364  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273365 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 16273440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 28321514 - 28321341
Alignment:
Q  19 aaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28321514 aaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaa 28321415  T
Q  119 aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28321414 aattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 28321341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 16274712 - 16274818
Alignment:
Q  87 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat 185  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||||    
T  16274712 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacat 16274810  T
Q  186 ttgatttt 193  Q
    ||||||||    
T  16274811 ttgatttt 16274818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 22825783 - 22825889
Alignment:
Q  87 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat 185  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  22825783 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaactttaagatcaattcaaacat 22825881  T
Q  186 ttgatttt 193  Q
    ||||||||    
T  22825882 ttgatttt 22825889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 28320076 - 28319969
Alignment:
Q  87 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaaca 184  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||||||||||||||    
T  28320076 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaaca 28319978  T
Q  185 tttgatttt 193  Q
    |||||||||    
T  28319977 tttgatttt 28319969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 16274500 - 16274545
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  16274500 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 16274545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 28320287 - 28320242
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  28320287 taatatggaacaagtgtaaagttgactcttattatatttagcaaac 28320242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 22825571 - 22825616
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||    
T  22825571 taatatgaaacaagtgtaaagttgactcttattatttttatcaaac 22825616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 31973170 - 31973345
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31973170 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactctaattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 31973269  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31973270 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 31973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 32967997 - 32968172
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967997 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 32968096  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32968097 aaaattctattagatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 32968172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 42394549 - 42394724
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42394549 caaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 42394648  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42394649 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 42394724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 10024563 - 10024389
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  10024563 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttactatttttaacaaacatgtcgtataagttaagagtaaaaattgactcct 10024464  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgattt 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10024463 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgattt 10024389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 10023299 - 10023185
Alignment:
Q  79 aaacatgtcgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaat 177  Q
    ||||||| |||||||| ||||||||||||| || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||    
T  10023299 aaacatgacgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaat 10023201  T
Q  178 tcaaacatttgatttt 193  Q
    |||| |||||||||||    
T  10023200 tcaagcatttgatttt 10023185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 42396012 - 42396118
Alignment:
Q  87 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat 185  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||||    
T  42396012 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacat 42396110  T
Q  186 ttgatttt 193  Q
    ||||||||    
T  42396111 ttgatttt 42396118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 32969797 - 32969870
Alignment:
Q  119 aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  32969797 aattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacatttgatttt 32969870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 42395800 - 42395845
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  42395800 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 42395845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 10023503 - 10023458
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  10023503 taatatagaacaagtgtaaagttgactcttattatttttagcaaac 10023458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 32969546 - 32969591
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||    
T  32969546 taatatggaagaagtgtaaagttgactcttattattttttgcaaac 32969591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 39832986 - 39833161
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39832986 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 39833085  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39833086 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 39833161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 19047127 - 19046952
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19047127 caaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 19047028  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19047027 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 19046952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 26240079 - 26239911
Alignment:
Q  23 taaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaatt 122  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26240079 taaggggtgtctaataatatggaataagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaaaagtaaaaattgactcctaaaatt 26239980  T
Q  123 ctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgattt 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26239979 ctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgattt 26239911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 19045683 - 19045577
Alignment:
Q  87 cgtataagttaagagtaaaaattgactccta-aaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat 185  Q
    |||||||| ||||||||||||| || ||||| |||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||||    
T  19045683 cgtataagctaagagtaaaaatagagtcctataaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacat 19045585  T
Q  186 ttgatttt 193  Q
    ||||||||    
T  19045584 ttgatttt 19045577  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 39834721 - 39834826
Alignment:
Q  88 gtataagttaagagtaaaaattgactccta-aaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatt 186  Q
    ||||||| |||||||||||||  | ||||| |||||||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  39834721 gtataagctaagagtaaaaatatagtcctataaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacatt 39834819  T
Q  187 tgatttt 193  Q
    |||||||    
T  39834820 tgatttt 39834826  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 19045895 - 19045850
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19045895 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 19045850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 39834508 - 39834553
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39834508 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 39834553  T

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Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 29995926 - 29996101
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29995926 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 29996025  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29996026 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 29996101  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 29997373 - 29997479
Alignment:
Q  87 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat 185  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||||    
T  29997373 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaattcaaacat 29997471  T
Q  186 ttgatttt 193  Q
    ||||||||    
T  29997472 ttgatttt 29997479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 29997161 - 29997206
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  29997161 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 29997206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 112625 - 112450
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112625 caaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 112526  T
Q  117 aaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112525 aaaattctattggatttgaat-aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttt 112450  T

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Target: scaffold0038; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 111182 - 111075
Alignment:
Q  87 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaaca 184  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||| |||||||||||||||    
T  111182 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaa-ttatattctcattaacaatcacaactttaagatcaattcaaaca 111084  T
Q  185 tttgatttt 193  Q
    |||||||||    
T  111083 tttgatttt 111075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 111393 - 111348
Alignment:
Q  37 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 82  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  111393 taatatggaacaagtgtaaagttgactcttattatatttagcaaac 111348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 41076 - 40901
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  41076 caaaggtaaggggtttctaataatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcct 40978  T
Q  117 aaaattctattggatttgaataaattatattttc-aataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40977 aaaattctattggatttgaat-aattatattttcaaataataatcacaacttttagatcaattcaaacatttgatttt 40901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 157709 - 157884
Alignment:
Q  17 caaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcct 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  157709 caaaggtaaggggtttctaataatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcct 157807  T
Q  117 aaaattctattggatttgaataaattatattttc-aataataatcacaacttttagatcaattcaaacatttgatttt 193  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  157808 aaaattctattggatttgaat-aattatattttcaaataataatcacaacttttagatcaattcaaacatttgatttt 157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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