View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4216_low_4 (Length: 378)
Name: NF4216_low_4
Description: NF4216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4216_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 42222518 - 42222179
Alignment:
| Q |
17 |
attttaaggcccttgttatgcaattcatgcctaatggtaatttggagacgagtttatacccagaagatcttgaatcaggatctttgctaactttgttgga |
116 |
Q |
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| T |
42222518 |
attttaaggcccttgttttgcaattcatgcctaatggtaatttggagatgagtttatacccggaagattttgagtcaggatcttctctaaccttgttgca |
42222419 |
T |
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| Q |
117 |
aatcttgaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgatccaccaatagtccattgtgatctgaaacctgccaatgtc |
216 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222418 |
aaggttaaacattgccattgatgttgcatctgccatggactacttgcaccatgattgtgatccaccaatagtccattgtgatctgaaacctgccaatgtc |
42222319 |
T |
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| Q |
217 |
ctactagatgaaaatatggttgcacatgtggcagattttggattggcaagatttctctctcaaaatccatcatagaaacatagtagcactctggaactga |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
42222318 |
ctactagatgaggatatggttgcacatgtggcagattttggattggcaaggtttctttctcaaaatccatcagagaaacataacagcactctagaactga |
42222219 |
T |
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| Q |
317 |
agggatcgatcggctatattgccccaggtacttactaatg |
356 |
Q |
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| T |
42222218 |
agggatcgatcggctatatcgcgccaggtacttactaatg |
42222179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 42210293 - 42209958
Alignment:
| Q |
17 |
attttaaggcccttgttatgcaattcatgcctaatggtaatttggagacgagtttatacccagaagatcttgaatcaggatctttgctaactttgttgga |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||| ||||| |||||| | |
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| T |
42210293 |
attttaaggcccttgttttgcaattcatgcctaatggtaatttggagatgagtttatacccggaagattttgagtcaggatcttctctaaccttgttgca |
42210194 |
T |
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| Q |
117 |
aatcttgaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgatccaccaatagtccattgtgatctgaaacctgccaatgtc |
216 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
42210193 |
aaggttaaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgacccaccaatagtccattgtgatctgaaacctgtcaatgtt |
42210094 |
T |
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| Q |
217 |
ctactagatgaaaatatggttgcacatgtggcagattttggattggcaagatttctctctcaaaatccatcatagaaacatagtagcactctggaactga |
316 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| || ||||||| |
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| T |
42210093 |
ctactagatgaagatatggttgcacatgtagcagattttggattggcaaggtttctctctcaaaatccatcagagaaacataacagcaccctagaactga |
42209994 |
T |
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| Q |
317 |
agggatcgatcggctatattgccccaggtacttact |
352 |
Q |
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||||||| ||||||||||| |||||||||||||||| |
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| T |
42209993 |
agggatcaatcggctatatcgccccaggtacttact |
42209958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 42191165 - 42191130
Alignment:
| Q |
17 |
attttaaggcccttgttatgcaattcatgcctaatg |
52 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42191165 |
attttaaggcccttgttatgcaattcatgcctaatg |
42191130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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