View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_high_11 (Length: 293)
Name: NF4217_high_11
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_high_11 |
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| [»] scaffold0520 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22822732 - 22822556
Alignment:
| Q |
1 |
acatcatcaaaaggggggagattgaagcatctggctaatttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatgttgatcaa |
100 |
Q |
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|||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22822732 |
acatcatcaaaaagggggagattgaagcctctaactagtttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatcttgatcag |
22822633 |
T |
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| Q |
101 |
cccaaacaaatatatatataaaattttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatct |
177 |
Q |
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| T |
22822632 |
cccaaacaaatatatatataaaattttgaaattgttttactaagattttgcaacttgtttacaatatgagtaaatct |
22822556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 22822500 - 22822464
Alignment:
| Q |
243 |
cgtcatcaccctcattttcgtttctcgatgtctcctt |
279 |
Q |
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| T |
22822500 |
cgtcatcaccctcattttcgtttctcgatgtctcctt |
22822464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 22851484 - 22851537
Alignment:
| Q |
125 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
22851484 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
22851537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 23479373 - 23479320
Alignment:
| Q |
125 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
23479373 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
23479320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 22853608 - 22853661
Alignment:
| Q |
125 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
22853608 |
tttgaaattgttttaccaaggttttgcaacttatttacaatatgagtaaatctc |
22853661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 8364943 - 8364996
Alignment:
| Q |
125 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
8364943 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
8364996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 20468357 - 20468410
Alignment:
| Q |
125 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
20468357 |
tttgaaattgttttaccaaggttttgcaacttgtttataatatgagtaaatctc |
20468410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 19766122 - 19766093
Alignment:
| Q |
149 |
tgcaacttgtttacaatatgagtaaatctc |
178 |
Q |
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| T |
19766122 |
tgcaacttgtttacaatatgagtaaatctc |
19766093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0520 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0520
Description:
Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6020 - 6092
Alignment:
| Q |
1 |
acatcatcaaaaggggggagattgaagcatctggcta-atttttgatgttgttagcttttagcttatagatta |
72 |
Q |
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|||||||||||| | ||||||||||||| || |||| | |||||||| ||||||||||||| || ||||||| |
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| T |
6020 |
acatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgttagcttttagattctagatta |
6092 |
T |
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