View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_high_12 (Length: 291)
Name: NF4217_high_12
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 34339471 - 34339541
Alignment:
| Q |
73 |
cactagatattatcttctttgattaatgtaacgtatctcacgctctaccgttttcacaagactagggccat |
143 |
Q |
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| T |
34339471 |
cactagatattatcttctttgattaatgtaacgtatctcacgctctaccgttttcacaagactagggccat |
34339541 |
T |
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Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 34339622 - 34339678
Alignment:
| Q |
224 |
gtggcaaacgataaacccacctgtcagaaaaaaccctattacatgtacggtgatgat |
280 |
Q |
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| T |
34339622 |
gtggcaaacgataaacccacctgtcagaaaaaaccctattacatgtacggtgatgat |
34339678 |
T |
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