View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_high_16 (Length: 250)
Name: NF4217_high_16
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16900820 - 16900581
Alignment:
| Q |
1 |
caaaagaagatagaggatgtgttttaacataacaagataaagggttatctctatcttaattatattctttcaaactaatttgatgttattgttccactaa |
100 |
Q |
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| T |
16900820 |
caaaagaagatagaggatgtgttttaacataacaagataaagggttatctctatcttaattatattctttcaaactaatttgatgttattgttccactaa |
16900721 |
T |
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| Q |
101 |
caatggattttgtatgaagtgattgtttaacacaatacaagttggcattaatattttttatctaattgttttccattcaaaatcatcataaaataggtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16900720 |
caatggattttgtatgaagtgattgtttaacacaatacaagtcggcattaatattttttatctaattgttttccattcaaaatcatcataaaataggtat |
16900621 |
T |
|
| Q |
201 |
ttatgggtatttttagtgaacaccacctacagcccctatg |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
16900620 |
ttatggttatttttagtgaacaccacctacagcccctatg |
16900581 |
T |
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