View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_high_3 (Length: 435)
Name: NF4217_high_3
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 417
Target Start/End: Complemental strand, 7429264 - 7428859
Alignment:
| Q |
6 |
agcagcacagacactcaacaatgtgctcaaccacacacactactcgagtattttgccgaataactcagttaggactagactttgtaagccataatattta |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7429264 |
agcaccacatacactcaacaatgtgctcaaccacacacactactcgagtattttgccgaataactcagttaggactagactttgtaagtcataatattta |
7429165 |
T |
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| Q |
106 |
gctaacaagatcattctttaggaagnnnnnnnnnnnnnnctttgtttataaatagtgtgtaaaaatcatctcaacgaacaatcaatcaatcaaatcaaaa |
205 |
Q |
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| T |
7429164 |
gctaacaagatcattctttaaaaa----aaaaaaaaaaactttgtctataaatagtgtgtaaaaatcatctcaacgaacaatcaatcaatcaaatcaaaa |
7429069 |
T |
|
| Q |
206 |
tgtggttttaatcttaatttactcgttataattttgcatttgatttacttctgcttaattttattaatttaatatttctcaaaaactcaacaatcttgct |
305 |
Q |
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| T |
7429068 |
tatgattttaatgttaatttactcgttatatttttgcatttgatttacttctgcttaattttattaatttaatatttctcaaaaactcaacaatcttgct |
7428969 |
T |
|
| Q |
306 |
tagtgctttttgaaggagttaaaacccatactactaaaggtcaaatgaaatttcttccttgaagtaataatcacttgaagaaaaaagagaatcacaagct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7428968 |
tagtgctttttgaaggagttaaaacccatactactaaaggacaaatgaactttcttccttgaag---taatcacttgaagaaaaaagagaatcacaagct |
7428872 |
T |
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| Q |
406 |
at-tagccgaatc |
417 |
Q |
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|| |||||||||| |
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| T |
7428871 |
atatagccgaatc |
7428859 |
T |
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