View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_10 (Length: 347)
Name: NF4217_low_10
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 31982947 - 31983271
Alignment:
| Q |
19 |
aaataggacacttaaaataaaattgtaaagaaattaaggacaagatacacattttgacaccggggaaagaaattaaacttggtggacgtcattctctcca |
118 |
Q |
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| T |
31982947 |
aaataggacacttaaaataaaattgtaaagaaattaaggacaagatacacattttgacaccggggaaagaaattaaacttggtggacgtcattctctcca |
31983046 |
T |
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| Q |
119 |
tgattcttttttgaagtttgattaacactacactaaatacttgctatgtcgaccaaatattagaatctcctctaatc-nnnnnnnnnnnnncacagaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31983047 |
tgattcttttttgaagtttgattaacactacactaaatgcttgctatgtcgaccaaatattagaatctcctctaatctttttattttttttcacagaaca |
31983146 |
T |
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| Q |
218 |
atttatgcaactcttttccaccatttgtttttagcctcatnnnnnnngataacgtagacagaacctgcttgtgaataatagcttaaactacaaaacgaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31983147 |
atttatgcaactcttttccaccatttgtttttagcctcataaaaaaagataacgtagacagaacctgcttgtgaataatagcttaaactacaaaacgaca |
31983246 |
T |
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| Q |
318 |
taataatttattgtcctatgcttct |
342 |
Q |
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|||||||||||||||||||| |||| |
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| T |
31983247 |
taataatttattgtcctatgtttct |
31983271 |
T |
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