View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4217_low_13 (Length: 305)

Name: NF4217_low_13
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4217_low_13
NF4217_low_13
[»] chr8 (4 HSPs)
chr8 (20-296)||(9810508-9810784)
chr8 (82-273)||(18177205-18177396)
chr8 (122-270)||(26969927-26970075)
chr8 (110-192)||(26953332-26953414)
[»] scaffold0015 (1 HSPs)
scaffold0015 (39-249)||(15393-15603)
[»] chr7 (4 HSPs)
chr7 (42-200)||(20489336-20489492)
chr7 (105-283)||(9816099-9816276)
chr7 (105-283)||(10718024-10718201)
chr7 (39-103)||(10326580-10326644)
[»] chr4 (4 HSPs)
chr4 (39-254)||(37840589-37840805)
chr4 (94-273)||(23061218-23061397)
chr4 (110-273)||(32881709-32881872)
chr4 (205-281)||(19317834-19317910)
[»] chr1 (4 HSPs)
chr1 (94-283)||(15230644-15230833)
chr1 (94-273)||(27875758-27875937)
chr1 (39-264)||(39284938-39285163)
chr1 (209-273)||(10396032-10396096)
[»] chr2 (1 HSPs)
chr2 (94-270)||(28591829-28592005)
[»] chr6 (3 HSPs)
chr6 (94-273)||(25906220-25906399)
chr6 (207-273)||(32894076-32894142)
chr6 (206-273)||(13108149-13108216)
[»] chr5 (1 HSPs)
chr5 (110-270)||(30302927-30303087)
[»] chr3 (1 HSPs)
chr3 (94-139)||(42435197-42435242)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 9810508 - 9810784
Alignment:
Q  20 agacggtaaaccaagatatttcccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaactt 119  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9810508 agacgatataccaagatatttcccattaccgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaactt 9810607  T
Q  120 cagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccctgaaaaataa 219  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  9810608 cagactttggaaggctaatggcctgcccggacgctaattcatatgtatgaagaatgttcttcataacttgtgcttccttctcctctgccctgaaaaataa 9810707  T
Q  220 aaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaatggatatgccatcaagatctctgc 296  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  9810708 aaagcagtcatctgtaaacaaaaagtgagaaatagtaggagtattggtacaaatggatatgtcatcaagatctctgc 9810784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 18177396 - 18177205
Alignment:
Q  82 cttcataggaggtggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttc 181  Q
    ||||| ||| ||||||||||||  ||| |||||||| |  || |||| ||||||||||||||||||  | |||| |||||| |||| ||| || ||||||    
T  18177396 cttcaaaggcggtggaacaacacggctgaagaaaacctaggaatttggaaggctaatggcctgccccaaagctagttcataagtatgaaggatattcttc 18177297  T
Q  182 ataacctgtgcttacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    || || || || |  || || |  ||||||||||| |||||||| |||| || |||||| | ||||||||||||||||||||| ||||||||    
T  18177296 atcacttgcgcctcattatcatcagccctgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtacaaat 18177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 270
Target Start/End: Original strand, 26969927 - 26970075
Alignment:
Q  122 gactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccctgaaaaataaaa 221  Q
    ||||||| ||| |||||||||||||| || || | |||||| ||||  ||||| |||||||| || ||||| |  || || |  ||||||||||| ||||    
T  26969927 gactttggaagactaatggcctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgcctcattatcatcagccctgaaaaacaaaa 26970026  T
Q  222 agcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtaca 270  Q
    |||| |||| || |||||| | ||||||||||||||||||||| |||||    
T  26970027 agcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtaca 26970075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 26953332 - 26953414
Alignment:
Q  110 aagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgc 192  Q
    |||||||| |||||||||| ||| |||||||||||||| || || | |||||| ||||  ||||| |||||||| || |||||    
T  26953332 aagaaaacctcagactttggaagactaatggcctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgc 26953414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 15393 - 15603
Alignment:
Q  39 ttcccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaacttcagactttgaaaggctaat 138  Q
    |||||| || |||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  15393 ttcccactaccgctctgactcctaggatgttggtgatggtatccttaataggagatggaacaacagtgctaaagaaaacttcagactttgaaaggctaat 15492  T
Q  139 ggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccctgaaaaataaaaagcagtcatatgtaaac 238  Q
    ||| |||||||| |||| ||||||| ||| || ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| | || |||     
T  15493 ggcttgcccggatgctatttcatatttatgaaaaatgttcttcataacttgtgcttccttctcctctgccctgaaaaataaaaagcagtcctctgcaaat 15592  T
Q  239 aaaaagtgaga 249  Q
    |||| ||||||    
T  15593 aaaaggtgaga 15603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 20489492 - 20489336
Alignment:
Q  42 ccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggc 141  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  20489492 ccattaccgctctgactccaaggatgttggtgatggtatccttcataggagatggaacaacaatgttaaagaaaacttcagactttggaaggctaatggc 20489393  T
Q  142 ctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttct 200  Q
     ||  ||||||||||||||||||||| ||||||||  |||||||| ||||||| |||||    
T  20489392 ttgatcggacgctaattcatatgtatgaagaatgt--ttcataacttgtgcttccttct 20489336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 9816099 - 9816276
Alignment:
Q  105 tgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctt 204  Q
    ||||||||||||||||||| |||| ||||||||| | | |||| || ||||| ||||| || |  ||||| |||||||||||||  ||||  ||||| |     
T  9816099 tgctaaagaaaacttcagattttggaaggctaatagtcagccccgaagctaactcataagtgtggagaatattcttcataacctacgcttcattctcatc 9816198  T
Q  205 tgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaatggatatgcca 283  Q
    |||||||||||| ||||| ||||||| || ||| || | ||||||||||||||||||||  |||||||| |||||||||    
T  9816199 tgccctgaaaaacaaaaa-cagtcatctgcaaataagaggtgagaaatagtaggtgcatgagtacaaatagatatgcca 9816276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 10718024 - 10718201
Alignment:
Q  105 tgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctt 204  Q
    ||||||||||||||||||| |||| ||||||||| | | |||| || ||||| ||||| || |  ||||| |||||||||||||  ||||  ||||| |     
T  10718024 tgctaaagaaaacttcagattttggaaggctaatagtcagccccgaagctaactcataagtgtggagaatattcttcataacctacgcttcattctcatc 10718123  T
Q  205 tgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaatggatatgcca 283  Q
    |||||||||||| ||||| ||||||| || ||| || | ||||||||||||||||||||  |||||||| |||||||||    
T  10718124 tgccctgaaaaacaaaaa-cagtcatctgcaaataagaggtgagaaatagtaggtgcatgagtacaaatagatatgcca 10718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 10326580 - 10326644
Alignment:
Q  39 ttcccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaaca 103  Q
    |||||||||| ||||||||||||||||| |||||||||| || ||| |||||||  |||||||||    
T  10326580 ttcccattagtgctctgactccaaggatattggtgatggcatcctttataggagagggaacaaca 10326644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 254
Target Start/End: Original strand, 37840589 - 37840805
Alignment:
Q  39 ttcccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaacttcagactttgaaaggctaat 138  Q
    ||||||||| |||||||||||||| |||||||||||||  || ||||||||||| |||||||| | | ||||||| ||||||||  |||| |||||||||    
T  37840589 ttcccattaccgctctgactccaaagatgttggtgatgacatccttcataggagatggaacaatagttctaaagacaacttcaggttttggaaggctaat 37840688  T
Q  139 ggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccctgaaaaat-aaaaagcagtcatatgtaaa 237  Q
    | |||| ||  | |||| |||||| |||| |||||| || ||||| || |||||||  || || ||||||||||||||| |||||| |||||| |  |||    
T  37840689 gacctgtcctaatgctacttcataggtatgaagaatatttttcattacatgtgcttctttttcatttgccctgaaaaataaaaaagtagtcatctacaaa 37840788  T
Q  238 caaaaagtgagaaatag 254  Q
    ||||| |||||||||||    
T  37840789 caaaaggtgagaaatag 37840805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 23061218 - 23061397
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgct 193  Q
    |||||||||| | || |||||||| ||| |||||| ||| ||||||| |||||| || || | |||||| ||||  ||||| |||||||| || |||||     
T  23061218 tggaacaacagtactgaagaaaacctcatactttggaagactaatggtctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgcc 23061317  T
Q  194 tacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    |  || || |   || ||||||| |||||||| |||| || |||||| | ||||||||||||||||||||| ||||||||    
T  23061318 tcattatcatcaaccttgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtacaaat 23061397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 273
Target Start/End: Complemental strand, 32881872 - 32881709
Alignment:
Q  110 aagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccc 209  Q
    |||||||| || ||||||| ||| ||||||| |||||| || || | |||||| ||||  ||| | |||||||| || ||||| | ||| || |    ||    
T  32881872 aagaaaacctcggactttggaagactaatggtctgccccgaagcaagttcataagtatgtagagtattcttcatcacttgtgcctccttatcgtcaatcc 32881773  T
Q  210 tgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    ||||||| |||||||| |||| || |||||| | ||||||||||||||||||||| ||||||||    
T  32881772 tgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtacaaat 32881709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 19317834 - 19317910
Alignment:
Q  205 tgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaatggatatgc 281  Q
    |||||||||||| ||||| |||||||||| ||| |||| |||||||||| | || ||||| ||||| || |||||||    
T  19317834 tgccctgaaaaacaaaaaacagtcatatgcaaataaaatgtgagaaataatgggagcattagtacatatagatatgc 19317910  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 283
Target Start/End: Complemental strand, 15230833 - 15230644
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgct 193  Q
    |||||||||||||||||||||  ||||| | |||| |||||||||  | || || || ||||  |  || |||| |||||| |||||||||||||  |||    
T  15230833 tggaacaacaatgctaaagaaggcttcaaattttggaaggctaataacatgtcccgaagctagcttgtaagtatgaagaatattcttcataacctacgct 15230734  T
Q  194 tacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaatggatatgcca 283  Q
    |  ||||| |||||||||||||||||||| ||||||| || |||||||| |||| |||||||||||||||  |||||||| |||||||||    
T  15230733 tctttctcatttgccctgaaaaataaaaaacagtcatctgcaaacaaaaggtgacaaatagtaggtgcatgagtacaaatagatatgcca 15230644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 27875937 - 27875758
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgct 193  Q
    |||||||||  |||| || ||||| || ||||||| ||| |||||||||||||| || |||| |||||| ||||  |||||||||||||| || || |||    
T  27875937 tggaacaactttgctgaaaaaaacctcggactttggaagactaatggcctgccctgaagctagttcataagtatggagaatgttcttcatcacttgcgct 27875838  T
Q  194 tacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    |   | || |   |||||||||| |||||||| ||||||| |||||| | ||||||||| ||||||||||| ||||||||    
T  27875837 tcactgtcatcaaccctgaaaaacaaaaagcaatcatatgcaaacaagaggtgagaaatggtaggtgcattagtacaaat 27875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 264
Target Start/End: Complemental strand, 39285163 - 39284938
Alignment:
Q  39 ttcccattagcgctctgactccaaggatgttggtgatggtatacttcataggaggtggaacaacaatgctaaagaaaacttcagactttgaaaggctaat 138  Q
    |||||||||  |||||||||||||||||||| |||||    | |||| || |||   |||||||| | |||||||||||||| || |||| ||| ||| |    
T  39285163 ttcccattacagctctgactccaaggatgttagtgataacgtccttcgtatgagagtgaacaacagttctaaagaaaacttctgattttggaagactagt 39285064  T
Q  139 ggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccctgaaaaataaaaagcagtcatatgtaaac 238  Q
    | ||  |||  | |||||||| ||||| | ||||||  ||||||| || |||||||  ||||| | | |||||||||||||||||||||||| |  ||||    
T  39285063 gtcccaccccaatgctaattcgtatgtgtgaagaatagtcttcattacatgtgcttcattctcatctaccctgaaaaataaaaagcagtcatctccaaac 39284964  T
Q  239 aaaaagtgagaaatagtaggtgcatt 264  Q
    ||||  |||||||||||||| |||||    
T  39284963 aaaagatgagaaatagtaggagcatt 39284938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 10396032 - 10396096
Alignment:
Q  209 ctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    |||||||| ||||| ||||||| || ||| |  | ||||||||||||||||||||| ||||||||    
T  10396032 ctgaaaaacaaaaaacagtcatctgcaaataggaggtgagaaatagtaggtgcattagtacaaat 10396096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 270
Target Start/End: Original strand, 28591829 - 28592005
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgct 193  Q
    |||||||||| | || |||||||| |||||||||| ||| |||||||||||||| || || | |||||| ||||  ||||| |||||||| || |||||     
T  28591829 tggaacaacagtactgaagaaaacctcagactttggaagactaatggcctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgcc 28591928  T
Q  194 tacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtaca 270  Q
    |  || || |  ||||||||||| |||||||| |||| || |||||| | ||||||||||||||||||||| |||||    
T  28591929 tcattatcatcagccctgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtaca 28592005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 25906220 - 25906399
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgct 193  Q
    |||||||||| | || |||||||| || ||||||| ||| |||||||||||||| || || | |||||| ||||  ||||| |||||||| || |||||     
T  25906220 tggaacaacactactgaagaaaacctcggactttggaagactaatggcctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgcc 25906319  T
Q  194 tacttctcctttgccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    |  || || |  ||||||||||| |||||||| |||| || |||||| | ||||||||||||||||||||| ||||||||    
T  25906320 tcattatcatcagccctgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatagtaggtgcattagtacaaat 25906399  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 32894142 - 32894076
Alignment:
Q  207 ccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    ||||||||||||||||||| |||| || |||||||| ||||||||| ||||||||||| ||||||||    
T  32894142 ccctgaaaaataaaaagcaatcatttgcaaacaaaaggtgagaaatggtaggtgcattagtacaaat 32894076  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 13108149 - 13108216
Alignment:
Q  206 gccctgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtacaaat 273  Q
    ||||| ||||| |||| |||||||| || |||||| | ||||||||||||||||| ||| ||||||||    
T  13108149 gccctaaaaaagaaaaggcagtcatctgcaaacaagaggtgagaaatagtaggtgtattagtacaaat 13108216  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 270
Target Start/End: Complemental strand, 30303087 - 30302927
Alignment:
Q  110 aagaaaacttcagactttgaaaggctaatggcctgcccggacgctaattcatatgtatcaagaatgttcttcataacctgtgcttacttctcctttgccc 209  Q
    |||||||| |||||||||| ||| |||||||||||||| || || | |||||| ||||  ||||| |||||||| || ||||| |  || || |   |||    
T  30303087 aagaaaacctcagactttggaagactaatggcctgccccgaagcaagttcataagtatggagaatattcttcatcacttgtgcctcattatcatcacccc 30302988  T
Q  210 tgaaaaataaaaagcagtcatatgtaaacaaaaagtgagaaatagtaggtgcattggtaca 270  Q
    ||||||| |||||||| |||| || |||||| | ||||||||| ||||||||||| |||||    
T  30302987 tgaaaaacaaaaagcaatcatctgcaaacaataggtgagaaatggtaggtgcattagtaca 30302927  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 42435242 - 42435197
Alignment:
Q  94 tggaacaacaatgctaaagaaaacttcagactttgaaaggctaatg 139  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||    
T  42435242 tggaacaacactgctaaagaaaacttcagattttggaaggctaatg 42435197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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