View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_16 (Length: 279)
Name: NF4217_low_16
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 17003819 - 17003550
Alignment:
| Q |
1 |
tttttcattccacatgcgagttgtaagaggttgtcgctctttttcatcatcagatttaaaagcatcacttgatttcataggccatatgtgagctccaaaa |
100 |
Q |
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| T |
17003819 |
tttttcattccacatgcgagttgtaagaggttgtcgctctttttcatcaccagatttaaaagcatcacttgattgcttaggccatatgcgagctccaaaa |
17003720 |
T |
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| Q |
101 |
gattgtcttattttttcgtttgtgttgtcacccgaaattattttttcatttctccatccacaaatgcccaagttaattttatttccaggatataggtcat |
200 |
Q |
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| T |
17003719 |
gattgtcttgttttttcttttgtgttgtcatcagaattatttttttcatttctccattcacaaatgcctaagttaattttatttccaggatataggtcat |
17003620 |
T |
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| Q |
201 |
gttcgnnnnnnnntgtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
270 |
Q |
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| T |
17003619 |
gttcgaaaaaaaatgtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
17003550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 17118109 - 17118164
Alignment:
| Q |
215 |
gtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
270 |
Q |
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| T |
17118109 |
gtccaatactgcttattttcttcacctctaatgggtagattggttctgctctctgc |
17118164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17003936 - 17003891
Alignment:
| Q |
1 |
tttttcattccacatgcgagttgtaagaggttgtcgctctttttca |
46 |
Q |
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| T |
17003936 |
tttttcaccccacatgcgagttgtaagaggttgtctctctttttca |
17003891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17003975 - 17003930
Alignment:
| Q |
1 |
tttttcattccacatgcgagttgtaagaggttgtcgctctttttca |
46 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
17003975 |
tttttcattccacatactagttgtaagaggttgtctctctttttca |
17003930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 17004005 - 17003968
Alignment:
| Q |
10 |
ccacatgcgagttgtaagaggttgtcgctctttttcat |
47 |
Q |
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| T |
17004005 |
ccacatgcgagttgtaagaggttgtttctctttttcat |
17003968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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