View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_2 (Length: 449)
Name: NF4217_low_2
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 338 - 439
Target Start/End: Complemental strand, 19923442 - 19923341
Alignment:
| Q |
338 |
tcatgataattgaacatcgatccatgtttgaattatatatagatttgatgaattaatacgaaatcaatttaatctttatataattatataatctggccta |
437 |
Q |
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| T |
19923442 |
tcatgataattaaacatcgatccatgttttaattatatatagatttgatgaattaatatgaaattaatttgatctttatataatgatataagctggccta |
19923343 |
T |
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| Q |
438 |
tg |
439 |
Q |
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|| |
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| T |
19923342 |
tg |
19923341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 19939335 - 19939192
Alignment:
| Q |
266 |
atagatgttctaattaatatatgatctatatat--ccaccgtggtaattgtgttgttttgaaataagacaa-------------tgatcatgataattga |
350 |
Q |
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| T |
19939335 |
atagatgttataattaatatatgatctatatatatccaccatagtaattgtgttgttttgaaagaggacaacgtttggtggtgatgatcatgataattga |
19939236 |
T |
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| Q |
351 |
acatcgatccatgtttgaattatatatagatttgatgaattaat |
394 |
Q |
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| T |
19939235 |
acatcgattcatgttttaattgtatatagatttgatgaattaat |
19939192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 19939773 - 19939726
Alignment:
| Q |
24 |
atttgcttgttattattctttctcttaccactgtccactgttctttct |
71 |
Q |
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| T |
19939773 |
atttgattgttattattctttctcttaccactatccactgttctttct |
19939726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 19923526 - 19923490
Alignment:
| Q |
198 |
atgatgacacttatattaaactgtttgtttgaatgaa |
234 |
Q |
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| T |
19923526 |
atgatgacacttttactaaactgtttgtttgaatgaa |
19923490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 4240091 - 4240009
Alignment:
| Q |
357 |
atccatgtttgaattatatatagatttgatgaattaatacgaaatcaatttaatctttatataattatataatctggcctatg |
439 |
Q |
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| T |
4240091 |
atccatgttttaattatatatagatttgatgaattaatatgaaattaatttgatctttatataatgatataatttggcctatg |
4240009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 4240634 - 4240558
Alignment:
| Q |
87 |
ttattataactcatcgatccatccatctatccatgactccnnnnnnnctgaatccaccaggtcctaattccttactacaag |
167 |
Q |
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| T |
4240634 |
ttattataactcatcgatccatccatc----catgactcctgtttctctgaatccaccaggtcctaattccttactacaag |
4240558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 4240282 - 4240216
Alignment:
| Q |
266 |
atagatgttctaattaatatatgatctatatatccaccgtggtaattgtgttgttttgaaataagacaa |
334 |
Q |
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| T |
4240282 |
atagatgttctaat--atatatgatctatatatccaccatagtaattgtgttcttttgaaacaagacaa |
4240216 |
T |
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