View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_21 (Length: 244)
Name: NF4217_low_21
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2621382 - 2621609
Alignment:
| Q |
1 |
tataaaaaatgattcaacgaattaatgattgctattgtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacc |
100 |
Q |
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| T |
2621382 |
tataaaaaatgattcaacgaattaatgattgctattgtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacc |
2621481 |
T |
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| Q |
101 |
tctttggacttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagtagaagc |
200 |
Q |
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| T |
2621482 |
tctttgggcttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagtagaagc |
2621581 |
T |
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| Q |
201 |
acttcaacgacttacaataccaatgaag |
228 |
Q |
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| T |
2621582 |
acttcaacgccttacaataccaatgaag |
2621609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 41317190 - 41317038
Alignment:
| Q |
76 |
gaacagtatgatgtgtatgggaacctctttggacttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatct |
175 |
Q |
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| T |
41317190 |
gaacagtatgatgtgtatgggaacctgctcggtcttcttgcatcgcatccggtgactccattagtgtcactgcaccaccttgacgtggttgagccaatct |
41317091 |
T |
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| Q |
176 |
tccctaatgccacaagagtagaagcacttcaacgacttacaataccaatgaag |
228 |
Q |
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| T |
41317090 |
tccccaatgtgactcgcgtagaagccctccaacggttgacaataccaatgaag |
41317038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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