View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_22 (Length: 244)
Name: NF4217_low_22
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 22016815 - 22016580
Alignment:
| Q |
9 |
catcatcagcattattttcattattatctgtcccttcattacgttcagtttctaccatggatagatcatcttttgcttgctcttcacaataaggttgaat |
108 |
Q |
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| T |
22016815 |
catcatcagcattattttcattattatctttcccttcattacgttcagtttctaccatggatagatcatcttttgcttgctcttcacaataaggttgaat |
22016716 |
T |
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| Q |
109 |
ttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttcaaattcactatg |
208 |
Q |
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| T |
22016715 |
ttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttcaaattcactatg |
22016616 |
T |
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| Q |
209 |
ctaagtcatcacaaagcagcacttacaaaagtaacc |
244 |
Q |
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| T |
22016615 |
ctaagtcatcacaaagcagcacttacaaaagtaacc |
22016580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 22016864 - 22016830
Alignment:
| Q |
11 |
tcatcagcattattttcattattatctgtcccttc |
45 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
22016864 |
tcatcagcattattttcattattatctgtcccttc |
22016830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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