View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_26 (Length: 213)
Name: NF4217_low_26
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 35335501 - 35335307
Alignment:
| Q |
2 |
ttcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcc |
101 |
Q |
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| T |
35335501 |
ttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccagcctcc |
35335402 |
T |
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| Q |
102 |
tgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatg |
196 |
Q |
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| T |
35335401 |
tgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatg |
35335307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 35335633 - 35335448
Alignment:
| Q |
2 |
ttcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcc |
101 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||| |||| ||| || |||| |
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| T |
35335633 |
ttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcgccatcactctcc |
35335534 |
T |
|
| Q |
102 |
tgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctc |
187 |
Q |
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| T |
35335533 |
tgctcatgctcctattcacaaacatgttccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctc |
35335448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 35335760 - 35335596
Alignment:
| Q |
7 |
cctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctc |
106 |
Q |
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| T |
35335760 |
cctcctcatcatactaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccaccactctcctgctc |
35335661 |
T |
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| Q |
107 |
atgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcac |
171 |
Q |
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| T |
35335660 |
atgcccctgttcacaaacatgttccagttcatcctcctcaccatgctaaacctccaacccatcac |
35335596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 16592029 - 16592096
Alignment:
| Q |
21 |
taaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc |
88 |
Q |
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| T |
16592029 |
taaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc |
16592096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 16602469 - 16602546
Alignment:
| Q |
11 |
ctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc |
88 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||| |||| |
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| T |
16602469 |
ctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc |
16602546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 16591906 - 16592004
Alignment:
| Q |
18 |
tgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgtt |
117 |
Q |
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| T |
16591906 |
tgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaaccttcatcccatcaacac---cctccttctcatgcccctatt |
16592002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 35335367 - 35335249
Alignment:
| Q |
4 |
catcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctg |
103 |
Q |
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|||||||||| ||||| ||||||||||| |||||| |||||||| ||||| ||||| | | | ||||||| ||||| |||||||||| |||||| |
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| T |
35335367 |
catcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcgcctattcaaccaccaacacatcaccacc---ctcctg |
35335271 |
T |
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| Q |
104 |
ctcatgcccctgttcacaaaca |
125 |
Q |
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|||| ||||||| ||||||||| |
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| T |
35335270 |
ctcacgcccctgctcacaaaca |
35335249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 24541055 - 24541009
Alignment:
| Q |
4 |
catcctcctcatcatgctaaacctccaacccatcaccgccatcaaca |
50 |
Q |
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||||||||||| | ||| ||||||||||||||||||||||| ||||| |
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| T |
24541055 |
catcctcctcaccctgccaaacctccaacccatcaccgccaccaaca |
24541009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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