View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_4 (Length: 431)
Name: NF4217_low_4
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 40285018 - 40285432
Alignment:
| Q |
1 |
tgagtaagcgacatcattataaaagaagagataattcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagtt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285018 |
tgagtaagcgatatcattataaaagaagagataattcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagtt |
40285117 |
T |
|
| Q |
101 |
atctcgcactcaattggggtttcagaaacaacgttgccagaaattgcaacaagcaatggtgacctttcaacatccagtagttgttctgaaaagtgaagaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40285118 |
atctcgcacttaattggggtttcagaaacaacgttgccagaaattgcaacaagcaatggtaacctttcaacatccagtagttgttctgaaaagtgaagaa |
40285217 |
T |
|
| Q |
201 |
tcccaaccatgatcagaaaccacagcagcacaaattgcttcatcaagaatcaagtagtacagtataatataatgaaagagtatatcattttcttataaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40285218 |
tcccaaccatgatcagaaaccacagcagcacaaattgcttcatcaagaatcaagtagtacactataatataatgaaagagtatatcattttcttataaaa |
40285317 |
T |
|
| Q |
301 |
gatacttgcctaactccttcagctcattgaaccggggaatggattcaagagtttccacatgcctgtacaaaaattaaaataatgattacaataacaaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40285318 |
gatacttgcctaactccttcagctcattgaaccggggaatggattcaagagtttccacatgcctgtacaataattaaaataatgattacaataacaaaga |
40285417 |
T |
|
| Q |
401 |
agaaaacgttatatg |
415 |
Q |
| |
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||||||||||||||| |
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| T |
40285418 |
agaaaacgttatatg |
40285432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 40266293 - 40266541
Alignment:
| Q |
6 |
aagcgacatcattataaaagaagagataattcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctc |
105 |
Q |
| |
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|||||||||| || ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||| |
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| T |
40266293 |
aagcgacatccttgtaaaagaagagattattaatgc-agtcagaaattgaagtctacatactgtttcttcaactacaacacctcttaaaccagtcaactc |
40266391 |
T |
|
| Q |
106 |
gcactcaattggggtttcagaaacaacgttgccagaaattgcaacaagcaatggtgacctttcaacatccagtagttgttctgaaaagtgaagaatccca |
205 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||| ||| |||| ||||| ||||||| | ||||||||||| ||| |||||| || |
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| T |
40266392 |
gcacttaattggggtttcagaaacaacacacccagaaattgcaacaaccaagtgtgatctttctccatccagcaattgttctgaaacgtg-agaatctca |
40266490 |
T |
|
| Q |
206 |
accatgatcagaaaccacagcagcacaaattgcttcatcaagaatcaagta |
256 |
Q |
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| T |
40266491 |
agtatgattagaaaccgtagcagcacaaattgcatcataaataatctagta |
40266541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 40292324 - 40292543
Alignment:
| Q |
34 |
attcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctcgcactcaattggggtttcagaaacaacg |
133 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | |||| ||||| |||||||||||| || |||| |
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| T |
40292324 |
attcatgctcgtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaact |
40292423 |
T |
|
| Q |
134 |
ttgccagaaattgcaacaagcaatggtgacctttcaacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaaccacagcagcacaa |
233 |
Q |
| |
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| ||||||||||| ||||| || ||| | |||| |||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
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| T |
40292424 |
tcgccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaa |
40292523 |
T |
|
| Q |
234 |
attgcttcatcaagaatcaa |
253 |
Q |
| |
|
||||| |||||| |||||| |
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| T |
40292524 |
attgcaacatcaataatcaa |
40292543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 40257861 - 40258077
Alignment:
| Q |
21 |
aaaagaagagataattcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctcgcactcaattggggt |
120 |
Q |
| |
|
||||| || ||| ||||||||| |||||||| ||||| |||||||| ||||||||| ||| ||||||||||||||| | | |||||| |||||| || |
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| T |
40257861 |
aaaaggagcgattattcatgcttttcagaaat-gaagtatacatactgtttcttcaattataacacctcttaaaccactgaactcgcagctaattggagt |
40257959 |
T |
|
| Q |
121 |
ttcagaaacaacgttgccagaaattgcaacaagcaatggtgacctttcaacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaac |
220 |
Q |
| |
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||||||| | || | |||||||||||||||| ||| || | |||| |||||| |||||| ||||||| ||||||||||| |||||||||||| |
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| T |
40257960 |
ttcagaacccactcttccagaaattgcaacaaccaagggaaatatttcttcatccaacagttgtgctgaaaaaacaagaatcccaaggatgatcagaaac |
40258059 |
T |
|
| Q |
221 |
cacagcagcacaaattgc |
238 |
Q |
| |
|
|||| ||| ||| ||||| |
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| T |
40258060 |
cacaacagtacagattgc |
40258077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 40272587 - 40272690
Alignment:
| Q |
49 |
aaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctcgcactcaattggggtttcagaaacaacgttgccagaaattgca |
148 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||| |||||| ||||||| | | ||||| | |||||||| |||| ||||||| |||||||||||| | |
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| T |
40272587 |
aaattgaagtttacatactcgttcttcgactattgcacctcctaaaccactcaactcgcccgtaattggggcttcacaaacaactctgccagaaattgta |
40272686 |
T |
|
| Q |
149 |
acaa |
152 |
Q |
| |
|
|||| |
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|
| T |
40272687 |
acaa |
40272690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 259
Target Start/End: Complemental strand, 43461499 - 43461307
Alignment:
| Q |
67 |
tctttcttcaactattacacctcttaaaccagttatctcgcactcaattggggtttcagaaacaacgttgccagaaattgcaacaagcaatggtgacctt |
166 |
Q |
| |
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|||||| |||||||||||||| ||||||| | | |||||||||| ||||||||||||||| |||| | | ||||||||| ||||| ||| ||| | || |
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| T |
43461499 |
tctttcgtcaactattacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacttcgtcagaaattgaaacaaccaagggtaatttt |
43461400 |
T |
|
| Q |
167 |
tcaacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaaccacagcagcacaaattgcttcatcaagaatcaagtagta |
259 |
Q |
| |
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|| |||||| |||||| || ||||||||| |||||||| | | ||||||||||||||| | |||||||| |||||| |||||||||||| |
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|
| T |
43461399 |
tccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaagtagta |
43461307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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