View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4217_low_5 (Length: 416)
Name: NF4217_low_5
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 41 - 405
Target Start/End: Original strand, 25515557 - 25515923
Alignment:
| Q |
41 |
gatatgttgtctgaagctgagaatctatttcaagagatgtactccatgtctatgaccccggataagcacgc--acacacaactttgtttgctgcatatat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
25515557 |
gatatgttgtctgaagctgagaatctatttcaagagatgtactccatgtctatgaccccggataagcgcgcgcacacacaactttgtttgctgcatatat |
25515656 |
T |
|
| Q |
139 |
taaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatggtcaaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25515657 |
taaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatggtcaaa |
25515756 |
T |
|
| Q |
239 |
ctcggatcacactttgnnnnnnntaagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtat |
338 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25515757 |
ctcggatcacactttgaaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtat |
25515856 |
T |
|
| Q |
339 |
gacatttttctttgtagggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
405 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25515857 |
gacatttttctttgtaaggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
25515923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 41 - 346
Target Start/End: Complemental strand, 25534898 - 25534592
Alignment:
| Q |
41 |
gatatgttgtctgaagctgagaatctatttcaagagatgtactccatgtctatgaccccggataagcacgcacacacaactttgtttgctgcatatatta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| | |||| || |||| ||| |
|
|
| T |
25534898 |
gatatgttgtctgaagctgagaatctatttcaagagatgtactccatgtctatgactccggatgtgtggacacactcgtttttgattcacagatatttta |
25534799 |
T |
|
| Q |
141 |
aagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatggtcaaact |
240 |
Q |
| |
|
|| || |||||||| ||||||||| |||| |||||| ||| |||||| |||||||||||||| | || ||| |||||||||||||||||| |||| |
|
|
| T |
25534798 |
aactgaataggatcgatgatgcttacatgacttataacaacatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaact |
25534699 |
T |
|
| Q |
241 |
cggatcacactttg--nnnnnnntaagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtat |
338 |
Q |
| |
|
| | || |||||| | ||| || ||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
25534698 |
caggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtag |
25534600 |
T |
|
| Q |
339 |
gacatttt |
346 |
Q |
| |
|
|||||||| |
|
|
| T |
25534599 |
gacatttt |
25534592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 25526710 - 25526588
Alignment:
| Q |
220 |
ttgattaagaatggtcaaactcggatcacactttgnnnnnnntaagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgca |
319 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||||| || ||||||||| || |||||||||||||||||||||||||||||| | || |
|
|
| T |
25526710 |
ttgattaagaatggtccaactcggatcgaactttgaaa----taagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactaca |
25526615 |
T |
|
| Q |
320 |
tcctaacatttaacagtatgacatttt |
346 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
25526614 |
tcctaacatttaacagtaggacatttt |
25526588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 25526866 - 25526804
Alignment:
| Q |
41 |
gatatgttgtctgaagctgagaatctatttcaagagatgtactccatgtctatgaccccggat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25526866 |
gatatgttgtctgaagctgagaatctatttcaagatatgtactccatgtctatgaccccggat |
25526804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 25541117 - 25541030
Alignment:
| Q |
318 |
catcctaacatttaacagtatgacatttttctttgtagggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
405 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||| ||| |||||||||| |||||| |
|
|
| T |
25541117 |
catcctaacatttaacagtaggacatttttctttgtagagcaatattttgtagggtctatgattttgtaagtgaatcctattgtctgt |
25541030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 25544459 - 25544412
Alignment:
| Q |
47 |
ttgtctgaagctgagaatctatttcaagagatgtactccatgtctatg |
94 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
25544459 |
ttgtctaaagctgagaatcagtttcaagagatgtactccatgactatg |
25544412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University