View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_6 (Length: 374)
Name: NF4217_low_6
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_6 |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 48966148 - 48965775
Alignment:
| Q |
1 |
tcattggtgacttcttgtacccttgggttcatgacttggcccgtaagcttcgggtccccaatctcgccttcaatggtttctccctgtttaccgtatgtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48966148 |
tcattggtgacttcttgtacccttgggttcatgacttggccagtaagctttgggtcccgaatctcgccttcaatggtttctccctgtttaccgtatgtct |
48966049 |
T |
|
| Q |
101 |
catggaaacccttagaacaaacccatcaatatatcctcatatggattctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48966048 |
catggaaacccttagaacaaacccatcaatatatcctcatatggattctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcacc |
48965949 |
T |
|
| Q |
201 |
ttgtctggaagacagccaaagtcatcagaagaatttatgggatcaatgctggagaaagagctcaaaagtaatggactcattgtcaacaatttcgctgagc |
300 |
Q |
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| T |
48965948 |
ttgtctggaagactgccaaagtcatcagaagaatttatgggatcaatgctggagaaagagctcaaaagtaatggactcattgtcaacaatttcgctgagc |
48965849 |
T |
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| Q |
301 |
ttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatcttggtccagcttct |
374 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
48965848 |
ttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatcttggtccagcttct |
48965775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 48962844 - 48962740
Alignment:
| Q |
270 |
aatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatcttggtccag |
369 |
Q |
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|||||||||||||||||||| |||||||| |||||||| ||||||| ||| | | || ||||| | ||||||||| |||||||||||||| ||||||| |
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| T |
48962844 |
aatggactcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccag |
48962745 |
T |
|
| Q |
370 |
cttct |
374 |
Q |
| |
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|||| |
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| T |
48962744 |
tttct |
48962740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 48958942 - 48958837
Alignment:
| Q |
19 |
acccttgggttcatgacttggcccgtaagcttcgggtccccaatctcgccttcaatggtttctccctgtttaccgtatgtctcatggaaacccttagaac |
118 |
Q |
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|||| |||||| |||||||||||| |||||||| | |||| ||||||||| |||||||||||| |||||||| | ||||||||| ||||||||| |
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| T |
48958942 |
acccctgggtttatgacttggcccataagcttcaaattcccaccatcgccttcactggtttctccctctttaccgtctccctcatggaatcccttagaat |
48958843 |
T |
|
| Q |
119 |
aaaccc |
124 |
Q |
| |
|
|||||| |
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| T |
48958842 |
aaaccc |
48958837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 48911963 - 48912075
Alignment:
| Q |
262 |
tcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatct |
361 |
Q |
| |
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|||||||||| ||| || ||||||||||||| ||||| |||||||| |||||||| || | | || ||||| | || |||| || ||||||||||| |
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| T |
48911963 |
tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct |
48912062 |
T |
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| Q |
362 |
tggtccagcttct |
374 |
Q |
| |
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||||||||||||| |
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| T |
48912063 |
tggtccagcttct |
48912075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 48974671 - 48974595
Alignment:
| Q |
258 |
gagctcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaa |
334 |
Q |
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||||||||||| |||| ||||| |||||||| ||| |||||||||| || ||||||||||| || |||||||||| |
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| T |
48974671 |
gagctcaaaagctatgggctcatcgtcaacaacttcactgagcttgatggagaagagtacatcgagcattatgagaa |
48974595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 12589786 - 12589899
Alignment:
| Q |
261 |
ctcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatc |
360 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||| ||||| || |||||| | || | |||||||| | ||| ||||| ||||||||||||| |
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| T |
12589786 |
ctcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatc |
12589885 |
T |
|
| Q |
361 |
ttggtccagcttct |
374 |
Q |
| |
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|||||||||||||| |
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| T |
12589886 |
ttggtccagcttct |
12589899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 13449039 - 13448962
Alignment:
| Q |
144 |
gattctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcaccttgtctggaagacagccaaag |
221 |
Q |
| |
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||||||||||| ||||| |||| |||||||||| |||||| ||||||| ||||||||||| ||||| || ||||||| |
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| T |
13449039 |
gattctgattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaag |
13448962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 13440760 - 13440646
Alignment:
| Q |
260 |
gctcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcat |
359 |
Q |
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|||||||||||| | |||||| ||||||| ||| |||| |||||||| ||||||| ||| | | |||||||| | ||||||||| |||| ||||||| |
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| T |
13440760 |
gctcaaaagtaaagcactcatcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcat |
13440661 |
T |
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| Q |
360 |
cttggtccagcttct |
374 |
Q |
| |
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|| |||||| ||||| |
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| T |
13440660 |
ctcggtccaacttct |
13440646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 12541167 - 12541131
Alignment:
| Q |
338 |
cacgggtcataaggcttggcatcttggtccagcttct |
374 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||||| |
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| T |
12541167 |
cacgggtcacaaggcttggcatcttggtccaacttct |
12541131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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