View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4217_low_7 (Length: 370)

Name: NF4217_low_7
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4217_low_7
NF4217_low_7
[»] chr6 (1 HSPs)
chr6 (10-355)||(34563581-34563927)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 34563581 - 34563927
Alignment:
Q  10 aagaatatggttgactaaatttgattggatagtnnnnnnnnntatttgaaggagattggatagtaaaaattgtttattaagattttgattaatttaatat 109  Q
    ||||| |||||||||||||||||||||||||||          | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563581 aagaaaatggttgactaaatttgattggatagtaaaaaaaaaaaattgaagtagattggatagtaaaaattgtttattaagattttgattaatttaatat 34563680  T
Q  110 ttaatgtcataggattgaaagtctacgtaaatcaggtctgcacaactggttaaaacnnnnnnn-aaatattctccaaaatgtactaattgaaaactatat 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  34563681 ttaatgtcataggattgaaagtctgcgtaaatcaggtctgcacaactggttaaaacctttttttaaatattctccaaaatgtactaattgaaaactatat 34563780  T
Q  209 acaagttatatattattaattaataaaagtcaaatcattctccaattaataaaattactataagcaggccattaatacctctataagcaaggttctacat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563781 acaagttatatattattaattaataaaagtcaaatcattctccaattaataaaattactataagcaggccattaatacctctataagcaaggttctacat 34563880  T
Q  309 gaagtaacagtgacaatctacaaattaaggttgaatcgattatattt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34563881 gaagtaacagtgacaatctacaaattaaggttgaatcgattatattt 34563927  T

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