View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4217_low_9 (Length: 349)
Name: NF4217_low_9
Description: NF4217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4217_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 71 - 332
Target Start/End: Complemental strand, 3895519 - 3895258
Alignment:
| Q |
71 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
170 |
Q |
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| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
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| Q |
171 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
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| Q |
271 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttccttt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttccttt |
3895258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 3895197 - 3895139
Alignment:
| Q |
261 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctc |
319 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3895574 - 3895538
Alignment:
| Q |
13 |
catcatctactactacaccagaaccaccactaccacg |
49 |
Q |
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| T |
3895574 |
catcatctactactacaccagaaccaccactaccacg |
3895538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
259 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
322 |
Q |
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|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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