View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4218_high_11 (Length: 337)
Name: NF4218_high_11
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 16288142 - 16287829
Alignment:
| Q |
4 |
aatggacagacatacctttaattaacaaagcaattacttttctcaaaaagaagnnnnnnnnnc----caaataaattacgtagtttcgtagcagaacgta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
16288142 |
aatggacagacatacctttaattaacaaagcaattatttttctcaaaaagaagaagaaaaaaaaaaacaaataaatgacgtagtttcgtagcagaacgta |
16288043 |
T |
|
| Q |
100 |
gacctaaaacgtaccaccaaaaaatcatatgtactgcattatgttcacaatttgcaatcaatcaattgaattaagaatatagaaaggaagttagtgtcct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16288042 |
gacctaaaacgtaccaccaaaaaatcatatgtactgcattatgttcacaatttgcaatcaatcaattgaattaagaatatagaaaggaagttagtgtcct |
16287943 |
T |
|
| Q |
200 |
tttaaaataacagtagcaccgtcaggttcacattttcagacttcaaatttcatgcatttactgtatgcgtattttatcattgcagaaacataaatcctaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16287942 |
tttaaaataacagtagcaccgtcaggttcacattttcagacttcaaatttcatgcatttactgtatgagtattttatcattgcagaaacataaatcctaa |
16287843 |
T |
|
| Q |
300 |
atttagtccgttag |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16287842 |
atttagtccgttag |
16287829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University