View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4218_high_21 (Length: 237)
Name: NF4218_high_21
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33789175 - 33789395
Alignment:
| Q |
1 |
atatcggactctatttgtattatacaaagtctaggttaataataaactttgtctttnnnnnnnntaaacatcagagttgagactaattgaataacttacc |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33789175 |
atatcggtctctatttgtcttatacaaagactaggtttttaataaactttgtcttttaaaaaaataaacatcagagttgagactaattaaataacttacc |
33789274 |
T |
|
| Q |
101 |
ttagtttcataaccttcaggaagttgcctgatgaaattatgtgcattagcagcagaagaagcagcaacaatttcatccatagtagcatcatttttcccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33789275 |
ttagtttcataaccttcaggaagttgcctaatgaaattatgagcattggcagcagaagaagcagcaacaatttcatccatagtagcatcatttttcccaa |
33789374 |
T |
|
| Q |
201 |
acataatattttccttaatag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33789375 |
acataatattttccttaatag |
33789395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University