View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_high_4 (Length: 548)
Name: NF4218_high_4
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 31 - 335
Target Start/End: Complemental strand, 22077105 - 22076801
Alignment:
| Q |
31 |
gcagaacctgtgcttatttatcatatcaaccttctttctaagtgaatagtctacttttaataatcatcatttatgcaaaaactggcatacaaaaccttct |
130 |
Q |
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| T |
22077105 |
gcagaacctatgcttatttatcatatcaaccttctttctaagtgaatagtctactttttataatcatcatttatgcaaaaattggcatacaaaaccttct |
22077006 |
T |
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| Q |
131 |
tcaacgttgctaatacctgtcaaactcatttcatcaaggaaattaannnnnnnatcgtcattatttagaggattaggtcacatatcataactgtttttag |
230 |
Q |
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| T |
22077005 |
tcatcgttgctaatacctgtcaaactcatttcatcaaggaaattattttttttatcgtcattatttagaggaataggtcacatatcataactgtttttag |
22076906 |
T |
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| Q |
231 |
ttattacttgaaaatggtctatataatttggatgtaaaatggtccatgaaccaattgtcaatacaaaagtactttttattaatattatttcaacattatg |
330 |
Q |
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| T |
22076905 |
ttattaattgaaaatggtctatataatttggatgtaaaatggtccatgaaccaattgtcaatacaaaagtactttttttgaatatcatttcaagattatg |
22076806 |
T |
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| Q |
331 |
acatg |
335 |
Q |
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||||| |
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| T |
22076805 |
acatg |
22076801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 331 - 532
Target Start/End: Complemental strand, 22076782 - 22076581
Alignment:
| Q |
331 |
acatgttgtccttgccagcaatatatgtttttccaaaaattatattcaagactataaacaacttcagtcattcatatttcaaatgatatatatatcacct |
430 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
22076782 |
acatgttgtccttgccagcaatatatgttttttcaaaaattatattcaagactataaacaacttcattcattcatatttcaaacttcatatatatcacct |
22076683 |
T |
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| Q |
431 |
attgagaaagttattattcatacttcactttattagcaaatatacctattcctttaaagagcttatttaattcataattggttctgcatctttagttact |
530 |
Q |
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| T |
22076682 |
attgagaaagttattattcatacttcactttattagcaaatatacctattcctttaaagagcttatttaattcataattggttctgcatctttagttgct |
22076583 |
T |
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| Q |
531 |
gg |
532 |
Q |
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|| |
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| T |
22076582 |
gg |
22076581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 22077219 - 22077139
Alignment:
| Q |
31 |
gcagaacctgtgcttatttatcatatcaaccttctttctaagtgaatagtctacttttaataatcatcatttatgcaaaaa |
111 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||| ||||| |
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| T |
22077219 |
gcagaacttatgcttatttatcatatcaaccttctttctaagttattagtttactttttataatcatcatttatggaaaaa |
22077139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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