View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_high_8 (Length: 361)
Name: NF4218_high_8
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 44467583 - 44467237
Alignment:
| Q |
1 |
cacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacacagttgctgcatctttgtctatatctcagca |
100 |
Q |
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| T |
44467583 |
cacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacacagttgctgcatctttgtctgtatctcagca |
44467484 |
T |
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| Q |
101 |
acattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaggatgatgctacaaatcctaatttgtggcttcagtgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44467483 |
acattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaagatgatgctacaaatcctaatttgtggcttcagtgc |
44467384 |
T |
|
| Q |
201 |
ccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467383 |
ccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgttg |
44467284 |
T |
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| Q |
301 |
aagataattatgatgagatgcattcatttttcgatacagttgatgat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467283 |
aagataattatgatgagatgcattcatttttcgatacagttgatgat |
44467237 |
T |
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