View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4218_high_9 (Length: 350)
Name: NF4218_high_9
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 29838680 - 29838984
Alignment:
| Q |
28 |
gttccattttgccacaatccgataatgtgaaatttaatcttttggtatcgactgatagaaagcagacgaacttctattgatatcttcttaaaggcttctg |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838680 |
gttccattttgccacaatccgataatgtgaaatttaatcttttggtatcgactaatagaaagcagacgaacttctattgatatcttcttaaaggcttctg |
29838779 |
T |
|
| Q |
128 |
gatatctggattgcgcagtcaaacatgttcttccacagctacctgcagaactcaggtttgtacatatctggattgtcccatttttgtattgtttaatcta |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838780 |
gatatctggattgcgcagtcaaacatgttcttccacagctacctgcagaactcaggtttgtacatatctggattgtcccatttttgtattgtttaatcta |
29838879 |
T |
|
| Q |
228 |
aataaccttcttcattcctttgatgtttattactctggctttgattttaggagaaacttaccagttgacctagcggaaggagttctccgagcactctctc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838880 |
aataaccttcttcattcctttgatgtttattactctggctttgattttaggagaaacttaccagttgacctagcggaaggagttctccgagcactctctc |
29838979 |
T |
|
| Q |
328 |
tacaa |
332 |
Q |
| |
|
||||| |
|
|
| T |
29838980 |
tacaa |
29838984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 34627358 - 34627295
Alignment:
| Q |
269 |
tgattttaggagaaacttaccagttgacctagcggaaggagttctccgagcactctctctacaa |
332 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||||||||| || || |||| ||||||| |
|
|
| T |
34627358 |
tgattttaggagaaatttaccagtagaccttgcagaaggagttcttcgtgcgctctgtctacaa |
34627295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 34627526 - 34627445
Alignment:
| Q |
104 |
ttgatatcttcttaaaggcttctggatatctggattgcgcagtcaaacatgttcttccacagctacctgcagaactcaggtt |
185 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| || || || |||| ||||||||||||||| | ||||| || |||||||| |
|
|
| T |
34627526 |
ttgatatcttcttaaaggctggtgggtatcttgactgtgctgtcaggcatgttcttccacagttgcctgctgagctcaggtt |
34627445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University