View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_1 (Length: 743)
Name: NF4218_low_1
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Original strand, 38709774 - 38710500
Alignment:
| Q |
1 |
aaatccattttcttaaggactttaataaaccattctacaagagtcctctggtgaattactacacacttgtatggtttcatggtgttgaacaactgttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38709774 |
aaatccattttcttaaggactttaataaaccattctacaagagtcctctggtgaattactacacacttctatggtttcatggtgttgaacaactgttagt |
38709873 |
T |
|
| Q |
101 |
gggattaccacatcagatgttagatgttttagtgaagggttagtttgttcagaagtaggtgagggacagggacag------agtcagaaaccataccttg |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38709874 |
gggattaccacatcagatgttagatgttttagtgaagggttggtttgttcagaagtaggtgagggacagggacagggacagagtcagaaaccataccttg |
38709973 |
T |
|
| Q |
195 |
agctatctcaggtgctggcttctgagctgcctttgtttgtagcttatgagtgtccggccttgtcagcctctgatgcgacattctttgatttgatataaca |
294 |
Q |
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|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709974 |
agctatctcaggtgttagcttctgagctgcctttgtttgtagcttatgagtgtccggccttgtcagcctctgatgcgacattctttgatttgatataaca |
38710073 |
T |
|
| Q |
295 |
aactctaacacattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtatacatgtacaggctcaccataaaactggtt |
394 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
38710074 |
aactctaacacattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtataca------ggctcgccataaaactggtt |
38710167 |
T |
|
| Q |
395 |
cacgataaaactagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacaatctcattgagtaattatttgatagattg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38710168 |
cacgataaaactagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacgatctcattgagtaattatttgatagattg |
38710267 |
T |
|
| Q |
495 |
tcaaatgtttgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatc |
594 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38710268 |
tcaaacgtttgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatc |
38710367 |
T |
|
| Q |
595 |
aaaataacatgnnnnnnnnngatgaaataccaaattgttatctgaaattaagttaatggaccaaaagcactttattattttctttatcacgcaagcagct |
694 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
38710368 |
aaaataacatgaaaaaaaaagatgaaataccaaattgttatctgaaattaagttaatggaccaaaatcactttattattttc-ttatcacgcaagcagct |
38710466 |
T |
|
| Q |
695 |
gactttggaatttggtgatgcaaatagtggtttg |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
38710467 |
gactttggaatttggtgatgcaaatagtggtttg |
38710500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 685003 - 684965
Alignment:
| Q |
623 |
accaaattgttatctgaaattaagttaatggaccaaaag |
661 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
685003 |
accaaattgttatctgaaattaagttaagggactaaaag |
684965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 11362044 - 11362082
Alignment:
| Q |
623 |
accaaattgttatctgaaattaagttaatggaccaaaag |
661 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
11362044 |
accaaattgttatctgaaattaagttaagggacgaaaag |
11362082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 25061351 - 25061313
Alignment:
| Q |
623 |
accaaattgttatctgaaattaagttaatggaccaaaag |
661 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
25061351 |
accaaattgttacctgaaattaagttaagggaccaaaag |
25061313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 32809383 - 32809421
Alignment:
| Q |
623 |
accaaattgttatctgaaattaagttaatggaccaaaag |
661 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||| |
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| T |
32809383 |
accaaactgttacctgaaattaagttaatggaccaaaag |
32809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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