View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_12 (Length: 345)
Name: NF4218_low_12
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 33368861 - 33369182
Alignment:
| Q |
18 |
attatttaagaaatggtcactactaatgtgatcatatataaaattaggtttaactaagtgttggcaattatattaatcatgtaggaatgctgaggtcatt |
117 |
Q |
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| T |
33368861 |
attatttaagaaatggtcactactaatgtgatcatatataaaattaggtttaactaagtgttggcaattatattaatcatgtaggaatgctgaggtcatt |
33368960 |
T |
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| Q |
118 |
gatcatgtgaataatgtatgagatgatggtgaccccgtgggt--aagaaagattatcaaaatgccatatcattggggacaactatacactatcttaagtc |
215 |
Q |
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| T |
33368961 |
aatcatgtgaataatgtatgagatgatggtgacccggtgggtaaaagaaagattatcaaaatgccatatcattggagacaactatacactatctcaagtc |
33369060 |
T |
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| Q |
216 |
agttttcactttttatac--atatataaaaaatcaggtggga-nnnnnnnnnctctgaatatatttttattttagcacgttatgaaattcttatttatat |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33369061 |
agttttcactttttatacatatatataaaaaatcaggtgggattttttttttctctgaatatatttttattttagcacgttatgaaattcttatttatat |
33369160 |
T |
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| Q |
313 |
ggcgttgctacatccccttcat |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
33369161 |
ggcgttgctacatccccttcat |
33369182 |
T |
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