View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4218_low_15 (Length: 326)

Name: NF4218_low_15
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4218_low_15
NF4218_low_15
[»] chr1 (23 HSPs)
chr1 (7-309)||(4963517-4963818)
chr1 (7-285)||(10597990-10598266)
chr1 (7-197)||(4150056-4150239)
chr1 (199-282)||(4146690-4146773)
chr1 (219-283)||(47555070-47555134)
chr1 (219-283)||(5500668-5500732)
chr1 (232-291)||(42663224-42663283)
chr1 (219-283)||(28013018-28013082)
chr1 (245-283)||(14758410-14758448)
chr1 (241-283)||(32267408-32267450)
chr1 (225-264)||(3120550-3120589)
chr1 (245-283)||(2960126-2960164)
chr1 (245-283)||(9902814-9902852)
chr1 (245-283)||(27532742-27532780)
chr1 (245-283)||(31962995-31963033)
chr1 (245-283)||(34012142-34012180)
chr1 (245-283)||(46931788-46931826)
chr1 (245-283)||(48353920-48353958)
chr1 (245-283)||(48620967-48621005)
chr1 (245-282)||(30254801-30254838)
chr1 (245-282)||(37451663-37451700)
chr1 (245-282)||(38823592-38823629)
chr1 (219-283)||(16135638-16135702)
[»] chr8 (19 HSPs)
chr8 (7-288)||(6446176-6446446)
chr8 (219-290)||(3859360-3859430)
chr8 (217-283)||(30650904-30650970)
chr8 (219-289)||(7291034-7291104)
chr8 (224-284)||(3038725-3038785)
chr8 (228-291)||(1872574-1872637)
chr8 (241-283)||(1149403-1149445)
chr8 (225-279)||(4108588-4108642)
chr8 (245-283)||(16446646-16446684)
chr8 (241-283)||(41362799-41362841)
chr8 (241-282)||(1953760-1953801)
chr8 (232-289)||(5018555-5018612)
chr8 (245-282)||(35859315-35859352)
chr8 (245-283)||(5299717-5299755)
chr8 (245-283)||(7890728-7890766)
chr8 (230-264)||(30380868-30380902)
chr8 (245-279)||(38644359-38644393)
chr8 (245-282)||(30654355-30654392)
chr8 (231-283)||(34686102-34686153)
[»] chr6 (11 HSPs)
chr6 (217-279)||(6613666-6613728)
chr6 (244-283)||(1946217-1946256)
chr6 (245-279)||(7054540-7054574)
chr6 (235-282)||(4104347-4104394)
chr6 (245-280)||(8513603-8513638)
chr6 (224-283)||(25441807-25441866)
chr6 (245-283)||(3879703-3879741)
chr6 (241-283)||(5627770-5627812)
chr6 (231-283)||(11083827-11083879)
chr6 (226-282)||(26301592-26301648)
chr6 (217-249)||(34994144-34994176)
[»] chr5 (31 HSPs)
chr5 (219-287)||(41031349-41031417)
chr5 (219-283)||(21321065-21321129)
chr5 (245-290)||(22020005-22020050)
chr5 (219-283)||(10237727-10237791)
chr5 (219-295)||(13381216-13381292)
chr5 (219-283)||(22616805-22616869)
chr5 (224-298)||(8762850-8762924)
chr5 (241-283)||(9200602-9200644)
chr5 (245-283)||(11898197-11898235)
chr5 (245-298)||(23954542-23954595)
chr5 (245-282)||(31705368-31705405)
chr5 (219-283)||(36055544-36055608)
chr5 (245-276)||(24886469-24886500)
chr5 (231-281)||(12080405-12080455)
chr5 (245-283)||(14409096-14409134)
chr5 (245-283)||(17157786-17157824)
chr5 (245-283)||(19120241-19120279)
chr5 (245-283)||(25500681-25500719)
chr5 (245-283)||(25669958-25669996)
chr5 (245-283)||(28416306-28416344)
chr5 (245-283)||(32563522-32563560)
chr5 (245-283)||(35511237-35511275)
chr5 (245-283)||(38527992-38528030)
chr5 (245-283)||(39573193-39573231)
chr5 (245-283)||(42343103-42343141)
chr5 (225-287)||(42682568-42682630)
chr5 (245-282)||(26269191-26269228)
chr5 (224-281)||(26412150-26412207)
chr5 (245-281)||(8437347-8437383)
chr5 (245-277)||(15992301-15992333)
chr5 (219-283)||(33163829-33163892)
[»] chr2 (17 HSPs)
chr2 (219-283)||(6178089-6178153)
chr2 (219-283)||(18514401-18514465)
chr2 (224-275)||(17244785-17244836)
chr2 (225-283)||(41644194-41644252)
chr2 (224-283)||(7565611-7565670)
chr2 (245-283)||(3177321-3177359)
chr2 (219-283)||(6357136-6357200)
chr2 (219-283)||(19093769-19093833)
chr2 (224-287)||(40053604-40053666)
chr2 (245-283)||(19424425-19424463)
chr2 (245-283)||(33660160-33660198)
chr2 (245-283)||(41961222-41961260)
chr2 (245-283)||(43648028-43648066)
chr2 (245-283)||(45328072-45328109)
chr2 (233-290)||(22963970-22964027)
chr2 (219-284)||(39788279-39788343)
chr2 (219-283)||(15651471-15651535)
[»] chr3 (27 HSPs)
chr3 (232-290)||(23165284-23165342)
chr3 (219-283)||(31706489-31706553)
chr3 (241-283)||(33378550-33378592)
chr3 (219-285)||(42205447-42205513)
chr3 (224-286)||(435328-435387)
chr3 (245-293)||(36012513-36012561)
chr3 (217-283)||(40640299-40640366)
chr3 (245-283)||(4015832-4015870)
chr3 (245-283)||(21193980-21194018)
chr3 (245-283)||(37158081-37158119)
chr3 (245-283)||(37203441-37203479)
chr3 (245-283)||(39283025-39283063)
chr3 (225-282)||(5125540-5125597)
chr3 (241-282)||(21009567-21009608)
chr3 (219-283)||(49359297-49359362)
chr3 (245-283)||(11467183-11467221)
chr3 (245-283)||(20373028-20373066)
chr3 (245-283)||(26941025-26941063)
chr3 (245-283)||(40552024-40552062)
chr3 (245-283)||(46297527-46297565)
chr3 (236-282)||(53811435-53811481)
chr3 (225-283)||(54607966-54608024)
chr3 (219-264)||(7568414-7568459)
chr3 (237-282)||(18271873-18271918)
chr3 (241-282)||(43975658-43975699)
chr3 (251-283)||(29099726-29099758)
chr3 (219-283)||(32180420-32180484)
[»] chr7 (18 HSPs)
chr7 (219-276)||(23402048-23402105)
chr7 (219-283)||(10674926-10674990)
chr7 (245-283)||(6546876-6546914)
chr7 (245-283)||(24212099-24212137)
chr7 (245-298)||(26587843-26587896)
chr7 (241-282)||(44599019-44599060)
chr7 (219-283)||(4902635-4902699)
chr7 (241-276)||(15672532-15672567)
chr7 (224-283)||(25470741-25470800)
chr7 (241-283)||(7335146-7335188)
chr7 (225-283)||(8759557-8759615)
chr7 (245-283)||(10358980-10359018)
chr7 (245-283)||(15612525-15612563)
chr7 (245-283)||(17842350-17842388)
chr7 (245-283)||(26980663-26980701)
chr7 (245-283)||(32432809-32432847)
chr7 (245-283)||(35353465-35353503)
chr7 (245-282)||(31578831-31578868)
[»] chr4 (29 HSPs)
chr4 (241-282)||(17173668-17173709)
chr4 (219-283)||(28292364-28292428)
chr4 (245-283)||(4205366-4205404)
chr4 (241-282)||(17168091-17168132)
chr4 (219-283)||(14246507-14246571)
chr4 (226-290)||(47237578-47237642)
chr4 (245-292)||(34361273-34361320)
chr4 (245-283)||(3043001-3043039)
chr4 (245-283)||(7703891-7703929)
chr4 (225-279)||(9743908-9743962)
chr4 (245-283)||(49376349-49376387)
chr4 (225-290)||(9813907-9813972)
chr4 (242-279)||(32912374-32912411)
chr4 (219-283)||(2708205-2708269)
chr4 (219-290)||(9409539-9409611)
chr4 (224-283)||(5914939-5914998)
chr4 (233-288)||(33035088-33035143)
chr4 (245-284)||(55240895-55240934)
chr4 (241-279)||(5047761-5047799)
chr4 (245-283)||(6864417-6864455)
chr4 (245-283)||(19440439-19440477)
chr4 (245-283)||(23431937-23431975)
chr4 (245-283)||(33816307-33816345)
chr4 (245-283)||(46887949-46887987)
chr4 (219-276)||(22721927-22721984)
chr4 (245-290)||(26896470-26896515)
chr4 (241-282)||(32579824-32579865)
chr4 (245-282)||(39400390-39400427)
chr4 (219-283)||(17612649-17612713)
[»] scaffold0001 (1 HSPs)
scaffold0001 (219-265)||(66086-66132)
[»] scaffold0008 (1 HSPs)
scaffold0008 (241-282)||(267654-267695)
[»] scaffold0061 (1 HSPs)
scaffold0061 (245-283)||(44338-44376)
[»] scaffold0022 (1 HSPs)
scaffold0022 (245-283)||(145780-145818)
[»] scaffold0017 (1 HSPs)
scaffold0017 (245-283)||(154411-154449)
[»] scaffold0002 (1 HSPs)
scaffold0002 (245-283)||(699-737)
[»] scaffold0200 (1 HSPs)
scaffold0200 (219-283)||(24487-24551)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 4963818 - 4963517
Alignment:
Q  7 atcttaaccccaaacacacaccacataagctaaaactcttgcctattgacaagatcccaacagcagcaacacgttgctggcccaaaggaaaacaggcagc 106  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  4963818 atcttaaccccagacacacaccacagaagataaaactcttgcctactgacaagatcccaacagcagcaacacgttgatggcccaaaggaaaacaggaagc 4963719  T
Q  107 aaccgccgccagaacaacccccaaaagcccctaaactaggaacaacaattagcaagcagaaaaacagccaccaagaaaagacgaaaaacagcagctaccg 206  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  4963718 aaccgccgccaacacaacccccaaaagcccctaaactaggaacaacagttaacaagcag-aaaacagccaccaagaaaagacgaaaaacagccgctaccg 4963620  T
Q  207 cctaccaccaacttattctattggctaaacaaaataa-ttttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttatttaatagacatt 305  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  4963619 cccaccaccaacttattctattggctaaacaaaataatttttttcaaaaaagtcagtttctt-actgcaccgtagaagtgtcctttatttaatagacatt 4963521  T
Q  306 tgtt 309  Q
    ||||    
T  4963520 tgtt 4963517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 10597990 - 10598266
Alignment:
Q  7 atcttaaccccaaacacacaccacataagctaaaactcttgcctattgacaagatcccaacagcagcaacacgttgctggcccaaaggaaaacaggcagc 106  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10597990 atcttaaccccaaacacacactacagaagctaaaactcttgcctactgacaagatcccaacagcagcaacacgttgctggcccaaaggaaaacatgcagc 10598089  T
Q  107 aaccgccgccagaacaacccccaaaagcccctaaactaggaacaacaattagcaagcagaaaaacagccaccaagaaaagacgaaaaacagcagctaccg 206  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  10598090 aaccgccgccagaacagcccccaaaagccccaaaactaggaacaacagttagcaagcag-aaaacagccaccaagaaaagatgaaaaacagcagccaccg 10598188  T
Q  207 cctaccaccaacttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtg 285  Q
    || | ||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  10598189 ccca-cactaacttattctattggttaaacaaaacaactttttcaaaaaagtcagtttcttgactgcaccgtagaagtg 10598266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 4150239 - 4150056
Alignment:
Q  7 atcttaaccccaaacacacaccacataagctaaaactcttgcctattgacaagatcccaacagcagcaacacgttgctggcccaaaggaaaacaggcagc 106  Q
    |||||||||||| |||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||      
T  4150239 atcttaaccccagacacacaccactgaagctaaaactcttgcctactgacaagatcccaacaacagcaacacgttgctgccccaaaggaaaacaggca-- 4150142  T
Q  107 aaccgccgccagaacaacccccaaaagcccctaaactaggaacaacaattagcaagcagaaaaacagccaccaagaaaagacgaaaaacag 197  Q
        |||||||||||| ||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4150141 ----gccgccagaacagcccccaaaagccccagaactaggaacaacagttagcaagcag-aaaacagccaccaagaaaagacgaaaaacag 4150056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 4146773 - 4146690
Alignment:
Q  199 agctaccgcctaccaccaacttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  4146773 agctaccgcccaccaccaacttattctattgattaaacaaaataactttttcaaaaaagtcagtttcttaacttcaccgtagaa 4146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 47555070 - 47555134
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  47555070 ttatactattggttaaacaaaataactttttcaaaaaagtcagtttcctaactgcaccgtagaag 47555134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 5500668 - 5500732
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||| || |||||||||||||||    
T  5500668 ttatactattagctaaacaaaataactttttcaaaaaagttagttttttaactgcaccgtagaag 5500732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 42663283 - 42663224
Alignment:
Q  232 taaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcccttt 291  Q
    |||| ||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||    
T  42663283 taaataaaataactttttcaaaaaagtcaatttcgtgactgcaccatagaagtgcccttt 42663224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 28013018 - 28013082
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||||||| |||||||| ||||||||||||| || |||||||||| |||| ||||||    
T  28013018 ttatgctattggctaaccaaaataactttttcaaaaaagacattttcttgactacaccatagaag 28013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 14758410 - 14758448
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  14758410 tttttcaaaaaagtcagtttcgtgactgcaccgtagaag 14758448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 32267408 - 32267450
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  32267408 taattttttcaaaaaagtcaatttcctgactgcaccgtagaag 32267450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 3120589 - 3120550
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagttt 264  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  3120589 tattggttaaacaaaataatttttttaaaaaagtcagttt 3120550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 2960126 - 2960164
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  2960126 tttttcaaaaaaatcagtttcctgactgcaccgtagaag 2960164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 9902852 - 9902814
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  9902852 tttttcaaaaaagtcaaattcttgactgcaccgtagaag 9902814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 27532780 - 27532742
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  27532780 tttttcaaaaaaatcagtttcatgactgcaccgtagaag 27532742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 31962995 - 31963033
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  31962995 tttttcaaaaaagtcagtttcataactgcaccgtagaag 31963033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 34012180 - 34012142
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  34012180 ttttttaaaaaagtcagtttcctgactgcaccgtagaag 34012142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 46931788 - 46931826
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  46931788 tttttcaaaaaagtcagtttccttactgcaccgtagaag 46931826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 48353920 - 48353958
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  48353920 tttttcaaaaaaatcagtttcatgactgcaccgtagaag 48353958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 48620967 - 48621005
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  48620967 tttttcagaaaagtcagtttcatgactgcaccgtagaag 48621005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 30254801 - 30254838
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  30254801 ttttttaaaaaagtcagtttcctgactgcaccgtagaa 30254838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 37451663 - 37451700
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  37451663 tttttcaaaaaagtcaatttcttcactgcaccgtagaa 37451700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 38823592 - 38823629
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  38823592 ttttttaaaaaagtcagtttcatgactgcaccgtagaa 38823629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 16135638 - 16135702
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||| |||||||||||||| |||||||||||||  | |||  |||||||||| ||||||    
T  16135638 ttatactattagctaaacaaaataactttttcaaaaaagcaaattttctgactgcaccctagaag 16135702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 6446446 - 6446176
Alignment:
Q  7 atcttaaccccaaacacacaccacataagctaaaactcttgcctattgacaagatcccaacagcagcaacacgttgctggcccaaaggaaaacaggcagc 106  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  6446446 atcttaaccccatacacacaccacacaagctaaaactcttgcctactgacaagatcccaacaacagcaacatgttgctggcccagaggaaaacaggcagc 6446347  T
Q  107 aaccgccgccagaacaacccccaaaagcccctaaactaggaacaacaattagcaagcagaaaaacagccaccaagaaaagacgaaaaacagcagctaccg 206  Q
    | | || ||||||||||||||          |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6446346 agctgctgccagaacaacccc----------taaactaggaacaacagttagcaagcagaaaa-cagccaccaagaaaagacgaaaaacagcagctaccg 6446258  T
Q  207 cctaccaccaacttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccc 288  Q
     | |||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  6446257 tccaccaccaacttattctattggctaaaaaaaacaacttttttaaaaaagtcagtttcttgactgcaccgtagaagtgccc 6446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 3859360 - 3859430
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||    
T  3859360 ttatactattggctaaacaaaataactttttcaaaaaagt-agtttcctaactgcaccgtagaagtgccctt 3859430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 30650970 - 30650904
Alignment:
Q  217 acttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  30650970 acttatacaattgactaaacaaaataactttttcaaaaaagtcaatttcttgactgcaccgtagaag 30650904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 7291034 - 7291104
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccct 289  Q
    |||| |||||| |||||||||||||||||||||||||||| | |||  | |||||||||||||||| ||||    
T  7291034 ttatactattgcctaaacaaaataattttttcaaaaaagttaattttctaactgcaccgtagaagttccct 7291104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 3038725 - 3038785
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagt 284  Q
    |||||||||||||||||||||||||| |||||||||| |||  ||||||||| ||| ||||    
T  3038725 ctattggctaaacaaaataatttttttaaaaaagtcaattttctgactgcactgtaaaagt 3038785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 1872637 - 1872574
Alignment:
Q  228 tggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcccttt 291  Q
    ||||| |||||||| | |||||||||||||||| |||||||||| |||| ||||||| ||||||    
T  1872637 tggctgaacaaaatgactttttcaaaaaagtcattttcttgactacaccatagaagtccccttt 1872574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 1149445 - 1149403
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  1149445 taattttttcaaaaaagtcaatttcctgactgcaccgtagaag 1149403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 4108642 - 4108588
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    ||||| ||||||||||||| |||||||||||||||| ||| |||||| |||||||    
T  4108642 tattgactaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgta 4108588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 16446684 - 16446646
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16446684 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 16446646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 41362799 - 41362841
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  41362799 taattttttcaaaaaagtcagtttcctgactgcaccatagaag 41362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 1953801 - 1953760
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  1953801 taattttttcaaaaaaatcagtttcctgactgcaccgtagaa 1953760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 5018555 - 5018612
Alignment:
Q  232 taaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccct 289  Q
    |||| ||||||| |||||||||||||||| |||| ||| |||||| ||||||||||||    
T  5018555 taaataaaataactttttcaaaaaagtcaatttcgtgattgcaccatagaagtgccct 5018612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 35859315 - 35859352
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  35859315 tttttcaaaaaagtcagtttcctgactgcaccgtagaa 35859352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 5299755 - 5299717
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  5299755 tttttcaaaaaagtcagtttcatgactgcaccatagaag 5299717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 7890766 - 7890728
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  7890766 tttttcaaaaaagtcagtttcatgaccgcaccgtagaag 7890728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 30380902 - 30380868
Alignment:
Q  230 gctaaacaaaataattttttcaaaaaagtcagttt 264  Q
    ||||||||||||||||||||||||||| |||||||    
T  30380902 gctaaacaaaataattttttcaaaaaaatcagttt 30380868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 38644359 - 38644393
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    ||||||||||||||||||||| |||||||||||||    
T  38644359 tttttcaaaaaagtcagtttcatgactgcaccgta 38644393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 30654392 - 30654355
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  30654392 tttttcaaaaaaatcagtttcctgactgcaccgtagaa 30654355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 34686102 - 34686153
Alignment:
Q  231 ctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||| |||| |||||||||||| ||| |||||||||||||||||    
T  34686102 ctaaaaaaaataacttttccaaaaaagtcag-ttcctgactgcaccgtagaag 34686153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 6613728 - 6613666
Alignment:
Q  217 acttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6613728 acttatactattgactaaacaaaataactttttcaaaaaagtcagtttcctgactgcaccgta 6613666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 283
Target Start/End: Original strand, 1946217 - 1946256
Alignment:
Q  244 ttttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  1946217 ttttttcaaaaaagtcagtttcctgactgcaccgtagaag 1946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 7054574 - 7054540
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    |||||||||||||||||||||||||||||||||||    
T  7054574 tttttcaaaaaagtcagtttcttgactgcaccgta 7054540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 4104347 - 4104394
Alignment:
Q  235 acaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  4104347 acaaaataactttttcaaaaaagtcagttttctgactgcacagtagaa 4104394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 8513603 - 8513638
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtag 280  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8513603 tttttcaaaaaagtcagtttcatgactgcaccgtag 8513638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 25441807 - 25441866
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| |||||||||| | ||||| |||||||||| ||| ||||||||||| ||||||    
T  25441807 ctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaag 25441866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 3879741 - 3879703
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  3879741 tttttcaaaaaaatcagtttcctgactgcaccgtagaag 3879703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 5627770 - 5627812
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||| |||||| |||||||| |||||||||||||||||    
T  5627770 taatttttttaaaaaaatcagtttcctgactgcaccgtagaag 5627812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 11083879 - 11083827
Alignment:
Q  231 ctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||| |||||||||||||| | ||| |||||| |||||||||||    
T  11083879 ctaaataaaataactttttcaaaaaagtaaattttttgacttcaccgtagaag 11083827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26301648 - 26301592
Alignment:
Q  226 attggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || ||| ||||||||||    
T  26301648 attgactaaataaaataattttttcaaaaatgtcaattttttaacttcaccgtagaa 26301592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 34994144 - 34994176
Alignment:
Q  217 acttattctattggctaaacaaaataatttttt 249  Q
    ||||||| |||||||||||||||||||||||||    
T  34994144 acttattatattggctaaacaaaataatttttt 34994176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 41031417 - 41031349
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcc 287  Q
    |||| ||||| |||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  41031417 ttatactattagctaaataaaataatttttttaaaaaagtcagtttcctgactgcaacgtagaagtgcc 41031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 21321065 - 21321129
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||  || ||||||| ||||||    
T  21321065 ttatactattggctaaacaaaataactttttcaaaaaagtcagttttctggctgcaccatagaag 21321129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 22020005 - 22020050
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||    
T  22020005 tttttcaaaaaagtcagtttcatgactgcaccgtagaagttccctt 22020050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 10237727 - 10237791
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||| ||||  |||||||||||| | |||||||||| |||||||    
T  10237727 ttatactattggctaaacaaaataacttttctaaaaaagtcagtcttttgactgcactgtagaag 10237791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 13381216 - 13381292
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttattt 295  Q
    |||| |||||| ||||||||||||||||||  |||| ||| |||||  |||| ||||||||||| ||||||||||||    
T  13381216 ttatactattgactaaacaaaataatttttctaaaatagttagtttactgaccgcaccgtagaattgccctttattt 13381292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 22616805 - 22616869
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||| |||| ||||||| |||||||  |||||||||| ||||||    
T  22616805 ttatactattggctaaacaaaataacttttccaaaaaaatcagttttctgactgcaccatagaag 22616869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 8762924 - 8762850
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttatttaat 298  Q
    ||||||| |||||||||| | ||||| |||||||||| ||| ||||||||||| ||||||  |||||||| ||||    
T  8762924 ctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagctccctttatctaat 8762850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 9200602 - 9200644
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  9200602 taattttttcaaaaaaatcagtttcatgactgcaccgtagaag 9200644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 11898197 - 11898235
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11898197 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 11898235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 23954595 - 23954542
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttatttaat 298  Q
    ||||||||||||||||||||| |||||||||| ||||||  ||||||| |||||    
T  23954595 tttttcaaaaaagtcagtttcctgactgcaccatagaagctccctttaattaat 23954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 31705405 - 31705368
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31705405 tttttcaaaaaagtcaatttcttgactgcaccgtagaa 31705368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 36055608 - 36055544
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||| |||||||||||||| |||| ||||||||| ||||| |||||| |||| ||||||    
T  36055608 ttatactattagctaaacaaaataacttttccaaaaaagttagttttttgactacaccttagaag 36055544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 276
Target Start/End: Original strand, 24886469 - 24886500
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcacc 276  Q
    ||||||||||||||||||||||||||||||||    
T  24886469 tttttcaaaaaagtcagtttcttgactgcacc 24886500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 12080455 - 12080405
Alignment:
Q  231 ctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtaga 281  Q
    ||||||||||||| |||||||||||||||| |||| ||||| |||| ||||    
T  12080455 ctaaacaaaataactttttcaaaaaagtcaatttcctgactacaccataga 12080405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 14409134 - 14409096
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  14409134 tttttcaaaaaaatcagtttcctgactgcaccgtagaag 14409096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 17157824 - 17157786
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  17157824 tttttcaaaaaagtcaatttcttgactgtaccgtagaag 17157786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 19120241 - 19120279
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  19120241 tttttcaaaaaagtcagtttcatgactgcaccttagaag 19120279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 25500719 - 25500681
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  25500719 tttttcaaaaaaatcagtttcatgactgcaccgtagaag 25500681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 25669958 - 25669996
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  25669958 tttttcaaaaaaatcagtttcatgactgcaccgtagaag 25669996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 28416344 - 28416306
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  28416344 tttttcaaaaaagtcagcttcatgactgcaccgtagaag 28416306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 32563522 - 32563560
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  32563522 tttttcaaaaaagtcagtttcataactgcaccgtagaag 32563560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 35511275 - 35511237
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  35511275 ttttttaaaaaagtcagtttcctgactgcaccgtagaag 35511237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 38528030 - 38527992
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  38528030 tttttcaaaaaaatcagtttcctgactgcaccgtagaag 38527992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 39573193 - 39573231
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39573193 tttttcaaaaaagtcagtttcataactgcaccgtagaag 39573231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 42343103 - 42343141
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  42343103 tttttcagaaaagtcagtttcatgactgcaccgtagaag 42343141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 42682568 - 42682630
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcc 287  Q
    |||||| ||| |||||||| ||||  ||||||||| ||||| | |||||||||||||||||||    
T  42682568 tattggttaaccaaaataacttttaaaaaaaagtcggtttcctaactgcaccgtagaagtgcc 42682630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 26269191 - 26269228
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  26269191 tttttcataaaagtcagtttcatgactgcaccgtagaa 26269228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 26412150 - 26412207
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtaga 281  Q
    |||||||||||| ||||| | ||||||||| |||||| |||||||||| |||| ||||    
T  26412150 ctattggctaaataaaatgactttttcaaataagtcattttcttgactacaccataga 26412207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 8437347 - 8437383
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtaga 281  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  8437347 tttttcaaaaaagtcagtttcctgactgcatcgtaga 8437383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 15992333 - 15992301
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccg 277  Q
    ||||||||||||||||||||| |||||||||||    
T  15992333 tttttcaaaaaagtcagtttcatgactgcaccg 15992301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 33163829 - 33163892
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||| ||||||||| |||||||| |||||||||| ||||  ||| |||||||||||||    
T  33163829 ttatactattgactaaacaaa-taatttttccaaaaaagtcggttttctgattgcaccgtagaag 33163892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 6178089 - 6178153
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||    
T  6178089 ttatactattggctaaacaaaataacttttctaaaaaagtcagttttttgactgcaccgtagaag 6178153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 18514465 - 18514401
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||||||    
T  18514465 ttatactattagctaaacaaaataactttttcaaaaaattcagtttcctgactccaccgtagaag 18514401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 17244836 - 17244785
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcac 275  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  17244836 ctattgactaaacaaaataattttttcaaaaaagtcagttttctgactgcac 17244785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 41644194 - 41644252
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||  |||||||||||||| ||||| || |||||||||||||||    
T  41644194 tattggctaaacaaaatatatttttcaaaaaagtaagtttttttactgcaccgtagaag 41644252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 7565611 - 7565670
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| |||||||||| | ||||| |||||||||| ||| ||||||||||||||||||    
T  7565611 ctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccgtagaag 7565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 3177321 - 3177359
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3177321 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 3177359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 6357136 - 6357200
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||||||||  |||| | |||||||||||||||| |||||||||| |||| ||||||    
T  6357136 ttatgctattggctaaattaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 6357200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 19093769 - 19093833
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||  |||||||| ||| ||||| |||||||||| ||| ||||||||||||||||||    
T  19093769 ttatactattgattaaacaaattaacttttttaaaaaagtcaattttttgactgcaccgtagaag 19093833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 40053604 - 40053666
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcc 287  Q
    |||||||||||||||  || ||||||||||||||| |||||| ||| ||||| |||||||||||    
T  40053604 ctattggctaaacaattta-ttttttcaaaaaagttagtttcctgaatgcacagtagaagtgcc 40053666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 19424463 - 19424425
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  19424463 tttttcaaaaaagtcagtttgatgactgcaccgtagaag 19424425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 33660198 - 33660160
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  33660198 tttttcagaaaagtcagtttcatgactgcaccgtagaag 33660160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 41961222 - 41961260
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  41961222 tttttcaaaaaattcagtttcctgactgcaccgtagaag 41961260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 43648066 - 43648028
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  43648066 tttttcaaaaaagtcaatttcctgactgcaccgtagaag 43648028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 45328072 - 45328109
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  45328072 tttttcaaaaaagtcagtttc-tgactgcaccgtagaag 45328109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 22963970 - 22964027
Alignment:
Q  233 aaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    ||||||||||| ||||| ||||||||||||||| | | ||||| |||||||| |||||    
T  22963970 aaacaaaataacttttttaaaaaagtcagtttcataattgcactgtagaagtaccctt 22964027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 39788343 - 39788279
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagt 284  Q
    |||| |||||| |||||||||||| ||||| ||||||| |||||||   |||||||||||||||||    
T  39788343 ttatactattgactaaacaaaatacttttt-caaaaaaatcagttttcagactgcaccgtagaagt 39788279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 15651471 - 15651535
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||||||| | ||||  |||| |||  |||||||||||| ||||    
T  15651471 ttatactattggctaaacaaaataattttctaaaaagggtcaattttctgactgcaccgtcgaag 15651535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 23165342 - 23165284
Alignment:
Q  232 taaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    |||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  23165342 taaataaaataactttttcaaaaaagtcaatttcatgactgcaccgtagaagtgccctt 23165284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 31706553 - 31706489
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||  |||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  31706553 ttatactattgattaaacaaaataactttttcaaaaaagtcagttttttgactgcaccgttgaag 31706489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 33378592 - 33378550
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  33378592 taattttttcaaaaaagtcagtttcctgactgcaccgtagaag 33378550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 42205447 - 42205513
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtg 285  Q
    |||| ||| |||||||||||||||| ||||| |||||| | |||||| |||||||||||||||||||    
T  42205447 ttatcctaatggctaaacaaaataactttttaaaaaaatttagtttcctgactgcaccgtagaagtg 42205513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 435328 - 435387
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgc 286  Q
    |||||||||||||||||||| |||| ||||||||| |||   |||||||||||||||||||||    
T  435328 ctattggctaaacaaaataacttttccaaaaaagttagt---ttgactgcaccgtagaagtgc 435387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 36012513 - 36012561
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttat 293  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  36012513 tttttcaaaaaagtcagtttcatgactgcaccgtagaagctccctttat 36012561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 40640366 - 40640299
Alignment:
Q  217 acttattctattggctaaacaaaataattttttcaa-aaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||| |||||| ||||||||||||| |||||||| |||||||| ||| ||||||| ||||||||||    
T  40640366 acttatactattgactaaacaaaataactttttcaaaaaaagtcaattttttgactgaaccgtagaag 40640299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 4015832 - 4015870
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4015832 tttttcaaaaaagtcagtttcatgactgcaccgtagaag 4015870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 21193980 - 21194018
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  21193980 tttttcaaaaaagtcagtttcatgactgcaccgtagaag 21194018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 37158081 - 37158119
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37158081 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 37158119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 37203441 - 37203479
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37203441 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 37203479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 39283025 - 39283063
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  39283025 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 39283063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 5125540 - 5125597
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||| |||| ||||||| |||||||||||||||| |||||||||| |||| |||||    
T  5125540 tattggttaaataaaataactttttcaaaaaagtcattttcttgactacaccatagaa 5125597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 21009608 - 21009567
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  21009608 taatttttttaaaaaagtcagtttcctgactgcaccgtagaa 21009567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 49359362 - 49359297
Alignment:
Q  219 ttattctattggctaaacaaaataa-ttttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||| |||||||||||||||| ||||||||||||||||| |||  | |||||||||||||||    
T  49359362 ttatactaatggctaaacaaaataacttttttcaaaaaagtcaattttctaactgcaccgtagaag 49359297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 11467183 - 11467221
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  11467183 tttttcaaaaaagtcagtttgatgactgcaccgtagaag 11467221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 20373066 - 20373028
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  20373066 tttttcaaaaaagtcagtttcctgactgcaccatagaag 20373028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 26941063 - 26941025
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  26941063 tttttcaaaaaagtcagttttctgactgcaccgtagaag 26941025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 40552062 - 40552024
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  40552062 tttttcaaaaaagtcagtttccagactgcaccgtagaag 40552024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 46297565 - 46297527
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  46297565 ttttttaaaaaagtcagttttttgactgcaccgtagaag 46297527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 53811481 - 53811435
Alignment:
Q  236 caaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||| |||||||| |||||||||||  ||||||||||||||||    
T  53811481 caaaataactttttcaagaaagtcagttttctgactgcaccgtagaa 53811435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 54607966 - 54608024
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||| ||||| | |||||||||||||||| |||||| ||| |||| ||||||    
T  54607966 tattggctaaataaaatgactttttcaaaaaagtcattttcttaactacaccatagaag 54608024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 7568459 - 7568414
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagttt 264  Q
    |||| |||||| ||||||||||||| ||||||||||| ||||||||    
T  7568459 ttatactattgactaaacaaaataactttttcaaaaatgtcagttt 7568414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 18271918 - 18271873
Alignment:
Q  237 aaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||| ||||| |||||||||| ||||||||||||||| |||||    
T  18271918 aaaataacttttttaaaaaagtcaatttcttgactgcaccatagaa 18271873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 43975699 - 43975658
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||| |||||||||  ||||||||||||||||    
T  43975699 taattttttcaaaagagtcagttttctgactgcaccgtagaa 43975658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 29099726 - 29099758
Alignment:
Q  251 aaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||| |||||||||||||||||    
T  29099726 aaaaaagtcagtttcatgactgcaccgtagaag 29099758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 32180484 - 32180420
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||||||||||| |||| |||| |||||| |||  ||||| || ||||||||    
T  32180484 ttatactattggctaaacaaaataacttttccaaagaagtcaattttctgactacatcgtagaag 32180420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 23402105 - 23402048
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcacc 276  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  23402105 ttatactattggctaaacaaaataacttttttaaaaaagtcagttttttgactgcacc 23402048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 10674990 - 10674926
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||  |||||||||||||||||| |||||||| |||||| ||| |||||||||||||    
T  10674990 ttatactattgaataaacaaaataatttttttaaaaaagttagtttcctgattgcaccgtagaag 10674926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 6546876 - 6546914
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  6546876 tttttcaaaaaagtcagtttcatgactgcaccgtagaag 6546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 24212099 - 24212137
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24212099 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 24212137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 26587896 - 26587843
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctttatttaat 298  Q
    ||||||||||||||||||||| ||| ||| |||||||||  |||||||||||||    
T  26587896 tttttcaaaaaagtcagtttcatgattgcgccgtagaagctccctttatttaat 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 44599019 - 44599060
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  44599019 taattttttcaaaaaaatcagtttcatgactgcaccgtagaa 44599060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 4902635 - 4902699
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||| ||||||||||||| |||||||||||||||| |||  ||||| |||| ||||||    
T  4902635 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccatagaag 4902699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 276
Target Start/End: Complemental strand, 15672567 - 15672532
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcacc 276  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15672567 taattttttcaaaaaagtcagtttcctgactgcacc 15672532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 25470741 - 25470800
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| |||||||||| | ||||| |||||||||| ||| ||||||||||| ||||||    
T  25470741 ctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaag 25470800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 7335146 - 7335188
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||| |||| |||||||||| ||||||    
T  7335146 taattttttcaaaaaagtcaatttcctgactgcaccatagaag 7335188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 8759557 - 8759615
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||| ||||| | |||||||||||||||| ||||||| || |||| ||||||    
T  8759557 tattggctaaataaaatgactttttcaaaaaagtcattttcttggctacaccatagaag 8759615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 10359018 - 10358980
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  10359018 tttttcaaaaaagttagtttcttaactgcaccgtagaag 10358980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 15612563 - 15612525
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  15612563 tttttaaaaaaagtcagtttcatgactgcaccgtagaag 15612525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 17842388 - 17842350
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  17842388 ttttccaaaaaagtcaatttcttgactgcaccgtagaag 17842350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 26980663 - 26980701
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  26980663 tttttcaaaaaagtcagtttcatgactgcaccttagaag 26980701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 32432809 - 32432847
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  32432809 ttttttaaaaaagtcagtttcctgactgcaccgtagaag 32432847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 35353465 - 35353503
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  35353465 tttttcaaaaaagtcagtttcctgactgcaccttagaag 35353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 31578868 - 31578831
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  31578868 tttttcaaaaaagtcagtttcctgactgcaccatagaa 31578831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17173668 - 17173709
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17173668 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 17173709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 28292428 - 28292364
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||| |||||||    
T  28292428 ttatactattggctaaataaaataacttttttaaaaaagtcaggttcttgactgcactgtagaag 28292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 4205366 - 4205404
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4205366 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 4205404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17168091 - 17168132
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  17168091 taattttttcaaaaaagtcagtttctttactgcaccgtagaa 17168132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 14246507 - 14246571
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||| ||||| | |||||||||||||||| |||||||||| |||| ||||||    
T  14246507 ttatgctattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 14246571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 47237578 - 47237642
Alignment:
Q  226 attggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    |||| ||||| ||||||| | |||||||||| ||||||| ||||||||| |||||||||||||||    
T  47237578 attgactaaagaaaataaatgtttcaaaaaactcagttttttgactgcatcgtagaagtgccctt 47237642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 34361320 - 34361273
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgcccttta 292  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||    
T  34361320 tttttcaaaaaagtcagtttcctgactgcaccgtagaagctcccttta 34361273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 3043001 - 3043039
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3043001 tttttcaaaaaagtcaatttcttgactgcaccgtagaag 3043039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 7703891 - 7703929
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  7703891 tttttcaaaaaagtcagtttcatgactgcaccgtagaag 7703929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 9743908 - 9743962
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||| |||||||    
T  9743908 tattggttaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgta 9743962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 49376349 - 49376387
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  49376349 tttttcaaaaaagtcagtttcctgactgcaccgtagaag 49376387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 9813972 - 9813907
Alignment:
Q  225 tattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    |||| |||||||||||||| || || |||||||||| |||| | ||||||||||||||||| ||||    
T  9813972 tattagctaaacaaaataacttatttaaaaaagtcaatttcataactgcaccgtagaagtgtcctt 9813907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 32912411 - 32912374
Alignment:
Q  242 aattttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32912411 aattttttcaaaaaagtcagtttcctgactgcaccgta 32912374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 2708205 - 2708269
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||| ||||||||||||| ||||| |||||||||| |||  ||||| |||||||||||    
T  2708205 ttatactattgactaaacaaaataacttttttaaaaaagtcaattttctgacttcaccgtagaag 2708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 9409539 - 9409611
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgc-accgtagaagtgccctt 290  Q
    |||| |||||| |||| |||||||| | ||||||||||||||||||  ||||||| ||| |||||||||||||    
T  9409539 ttatactattgactaatcaaaataactctttcaaaaaagtcagttttctgactgcaaccttagaagtgccctt 9409611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 5914998 - 5914939
Alignment:
Q  224 ctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||| |||||||||| | ||||| |||||||||| ||| ||||||||||| ||||||    
T  5914998 ctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaag 5914939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 33035143 - 33035088
Alignment:
Q  233 aaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccc 288  Q
    ||||||||||  ||||||| ||||| ||||||| |||||||||| |||||||||||    
T  33035143 aaacaaaatatctttttcagaaaagacagtttcctgactgcaccatagaagtgccc 33035088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 55240934 - 55240895
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagt 284  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  55240934 tttttcaaaaaagtcagtttcataactgcaccgtagaagt 55240895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 5047799 - 5047761
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgta 279  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  5047799 taattttttcaaaaaagtctgtttcctgactgcaccgta 5047761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 6864417 - 6864455
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  6864417 tttttcaaaaaagtcagttttctgactgcaccgtagaag 6864455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 19440477 - 19440439
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  19440477 ttttttaaaaaagtcagtttcctgactgcaccgtagaag 19440439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 23431937 - 23431975
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  23431937 tttttcaaaaaagtcagtttcatgactgcactgtagaag 23431975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 33816345 - 33816307
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  33816345 tttttcaaaaaagtcagtttcctgactgcatcgtagaag 33816307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 46887987 - 46887949
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  46887987 tttttcaaaaaagtcagtttcctgattgcaccgtagaag 46887949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 22721984 - 22721927
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcacc 276  Q
    |||||| |||||||||||||||| | |||| ||||||||||| |||||| ||| ||||    
T  22721984 ttattccattggctaaacaaaatgacttttccaaaaaagtcattttcttaactacacc 22721927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 26896470 - 26896515
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaagtgccctt 290  Q
    ||||| |||||||||| |||| |||||||||||||||||| |||||    
T  26896470 ttttttaaaaaagtcaatttcctgactgcaccgtagaagttccctt 26896515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 32579824 - 32579865
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  32579824 taattttttcaaaaaagtcagttttctaactgcaccgtagaa 32579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 39400390 - 39400427
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  39400390 tttttcaaaaaagtcagtttcatgactggaccgtagaa 39400427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 17612649 - 17612713
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| |||||||||||| ||||||| |||||||||||| | | |||  |||||||| ||||||||    
T  17612649 ttatactattggctaaataaaataactttttcaaaaaaatgaattttctgactgcatcgtagaag 17612713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 66086 - 66132
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttc 265  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  66086 ttatactattggctaaacaaaataattttttcaaaaaagttagtttc 66132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 267654 - 267695
Alignment:
Q  241 taattttttcaaaaaagtcagtttcttgactgcaccgtagaa 282  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  267654 taattttttcaaaaaagtcagtttcttgactgcaccatagaa 267695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 44338 - 44376
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  44338 tttttcaaaaaagtcagtttgttgactgcatcgtagaag 44376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 145818 - 145780
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  145818 tttttcaaaaaagtcaatttcctgactgcaccgtagaag 145780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 154449 - 154411
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  154449 tttttcaaaaaagtcagtttgttgactgcatcgtagaag 154411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 699 - 737
Alignment:
Q  245 tttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  699 tttttcaaaaaaatcaatttcttgactgcaccgtagaag 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 24551 - 24487
Alignment:
Q  219 ttattctattggctaaacaaaataattttttcaaaaaagtcagtttcttgactgcaccgtagaag 283  Q
    |||| ||||||||| |||||||||| ||||  ||||||||||| || || |||||| ||||||||    
T  24551 ttatactattggcttaacaaaataacttttctaaaaaagtcagcttttttactgcatcgtagaag 24487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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