View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_16 (Length: 308)
Name: NF4218_low_16
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 52479423 - 52479687
Alignment:
| Q |
18 |
gtattttcttatactttttcttcaattgatttcgagtgtcttttaggtgtttgatgaaatgcttcaacgatcatcattcacattttcaggtaaaatttgt |
117 |
Q |
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| T |
52479423 |
gtattttcttatactttttcttcaatagatttcgagtgtcttttaggtgtttgatgaaatgcttcaacgatcatcattcacattttcaggtaaaatttgt |
52479522 |
T |
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| Q |
118 |
tgaatggaggttactttaagggagaaggaatcagatgattgggtttacagaggcgaaggagctgctaatcttgttctcgcttacgttggatcatgtcctg |
217 |
Q |
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| T |
52479523 |
tgaatggaggttactttaagggagaaggaagcagatgattgggtttacagaggcgaaggagctgctaatcttgttctcgcttacattggatcatgtcctg |
52479622 |
T |
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| Q |
218 |
catttgtgcgttcttcaatactctttctcaatctcttaattcaccgcattgtattatgaagctga |
282 |
Q |
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| T |
52479623 |
catttgtgcgttcttcaatactctttctcaatctcttaattcaccgcattgtattatgaagctga |
52479687 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 7200286 - 7200332
Alignment:
| Q |
155 |
attgggtttacagaggcgaaggagctgctaatcttgttctcgcttac |
201 |
Q |
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| T |
7200286 |
attgggtttatagaggtgaaggtgctgctaatcttgttctctcttac |
7200332 |
T |
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