View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_17 (Length: 294)
Name: NF4218_low_17
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_17 |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: scaffold0075 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 15478 - 15750
Alignment:
| Q |
17 |
acatctatggtcaatggcaccataatcaataagccaaaagccaaatattggatgatgtagataaaagaaagaaacaacactatgattacctgcactagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15478 |
acatctatggtcaatggcaccataatcaataagccaaaagccaaatattggatgatgtagataaaagaaagaaacaacactatgattacctgcactagaa |
15577 |
T |
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| Q |
117 |
tgagtatgagattggcctgaagtaagcacaggtgagacactgacatgattggaaacagaaggagtggaagtttaagcaacgaaatttgattgttgaagca |
216 |
Q |
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| T |
15578 |
tgagtatgagattggtctgaagtaagcacaggtgagacactgacatgattggaaacagaaggagtggaagtttaagcaacgaaatttgattgttgaagca |
15677 |
T |
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| Q |
217 |
aggatacatgttgttcaaacttcttttgagataaaccagtactgagactatttacgaaaccatctgtgctgct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
15678 |
aggatacatgttgttcaaacttcttttgagataaaccagtactgagactatttacgaaaccatcagtgttgct |
15750 |
T |
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