View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_22 (Length: 254)
Name: NF4218_low_22
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 49414972 - 49415226
Alignment:
| Q |
1 |
atataatactgtaaaaattaaagatatcaatatcaatttgttttcaaaaattgtttaaaataatcctatgaaatgatagctcgtctagcaatacagtgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49414972 |
atataatactgtaaaaattaaagatatcaatatcaatttgttttcaaaaattgtttaaaataatcctatgaaatgatagctcgtctagcaatacagtgca |
49415071 |
T |
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| Q |
101 |
accaactgactaacacatttgacaataacaagatatggtagcatgtgtggtcgtcgcacgtttatctattaatcacaggtgattgtcctct-nnnnnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49415072 |
accaactgactaacacatttgacaataacaagatatggtagcatgtgtggtcgtcgcacgtttatctattaatcacaggtgattgtcctctaaaaaaaaa |
49415171 |
T |
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| Q |
200 |
ntcacaggtgattgtgcgcaattttgcatcagcattacctcataattatgtcatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49415172 |
atcacaggtgattgtgcgcaattttgcatcagcattacctcataattatgtcatg |
49415226 |
T |
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