View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_23 (Length: 238)
Name: NF4218_low_23
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 16287819 - 16287625
Alignment:
| Q |
23 |
tcctaaatttaatactaacccaaatggcagagcagatactcattaacaacaatcaaagttttgttgtactataaagagttaactgcatggatcatattta |
122 |
Q |
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| T |
16287819 |
tcctaaatttaatactaacccaaatggcagaggagatactcattaacaacaatcaaagttttgttgcactataaagagttaactgcatggatcatattta |
16287720 |
T |
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| Q |
123 |
aagatatactatttaactccaaatgttaaataagggtagggtttaaggttttcattgatcctcctctacttctaactaatgaaggataaaaccta |
217 |
Q |
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| T |
16287719 |
aagatatactatttaactccaaatgttaaataagggtagggtttaaggttttcattgatcctcctctacttctaactaatgaaggataaaaccta |
16287625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 53944390 - 53944351
Alignment:
| Q |
107 |
gcatggatcatatttaaagatatactatttaactccaaat |
146 |
Q |
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| T |
53944390 |
gcatggatcatatataaagatatactatttaactcaaaat |
53944351 |
T |
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