View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_25 (Length: 227)
Name: NF4218_low_25
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33445716 - 33445490
Alignment:
| Q |
1 |
tcatctacagggaagaaggccattgttgccccatattctggacacatgtttgcaatcgtagccctatcaggtaacgacagttcaccaacgccttcacctt |
100 |
Q |
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| T |
33445716 |
tcatctacagggaagaaggccattgttgccccatattctggacacatgtttgcaatcgtagccctatcaggtaacgacagttcaccaacgccttcacctt |
33445617 |
T |
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| Q |
101 |
aagatatatttaaataggctcactcatttgtgcagatgttgtgaaagttgttcataaactctatcctatgcagtctcatcatataattaacttaccgtaa |
200 |
Q |
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| T |
33445616 |
aagatatatttaaataggctcactcatttgtgcagatgttgtgaaagttgttcttaaactctatcctatgcagtctcatcatataattaacttaccctaa |
33445517 |
T |
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| Q |
201 |
aattcaatgaatttgccaacaacacca |
227 |
Q |
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| T |
33445516 |
aattcaatgaatttgccaacaacacca |
33445490 |
T |
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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 40560106 - 40560222
Alignment:
| Q |
12 |
gaagaaggccattgttgccccatattctggacacatgtttgcaatcgtagccctatcaggtaacgacagttcaccaacgccttcaccttaag--atatat |
109 |
Q |
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||||||| ||||||||| | | |||| | |||||||||||||||| || |||| ||||||||| |||||||| ||||||||||| |||||| |||||| |
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| T |
40560106 |
gaagaagaccattgttgtctcgtattatcaacacatgtttgcaatcctatccctgtcaggtaacaacagttcatcaacgccttcaacttaaggcatatat |
40560205 |
T |
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| Q |
110 |
ttaaataggctcactca |
126 |
Q |
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| T |
40560206 |
ttaaatagactcactca |
40560222 |
T |
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