View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_26 (Length: 209)
Name: NF4218_low_26
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 45306597 - 45306772
Alignment:
| Q |
17 |
aataatatgcattccttatactcttttttgtgtagtacttgaaatgtttggatatgtattcttgctaataattatccttttccaaaatccatttttcctc |
116 |
Q |
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| T |
45306597 |
aataatatgcattccttatactctattttgtg----acaagat-tgtttggatatgtattcttgctaataattatccttttccaaaatccatttttcctc |
45306691 |
T |
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| Q |
117 |
ttaattcaccttcttgttttactt-aaatttttatgcgtaattgctaattttatttgttaatttgattgtgtaggatgatg |
196 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45306692 |
ttaattcaccttcttgttttacttaaaaattttatgcgtaattgctaattttatttgttaatttgattatgtaggatgatg |
45306772 |
T |
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