View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4218_low_29 (Length: 202)
Name: NF4218_low_29
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 2627324 - 2627494
Alignment:
| Q |
19 |
aaatctcttatatgcaaatggtgcatctaattaatatgaatatcttaagagattnnnnnnnn---caagaagtttttagatgaaattttattaataatat |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627324 |
aaatctcttatatgcaaatggtacatctaattaatatgaatatcttaaaagattaaaaaaaaaaacaagaagtttttagatgaaattttattaataatat |
2627423 |
T |
|
| Q |
116 |
tatgggtgcatctaatacagacctctnnnnnnngtctaaaatagacgcgtccttctccaccatttagaatt |
186 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2627424 |
tatggatgcatctaatacagacctctaaaaaaagtctaaaatagatgcgtccttctccaccatttagaatt |
2627494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University