View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4218_low_3 (Length: 675)
Name: NF4218_low_3
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 19 - 661
Target Start/End: Original strand, 33444745 - 33445387
Alignment:
| Q |
19 |
agtctcctatggttactatgatcaattgtcggaattaagttgaaaattttggacttactgcatgtaggttccagtggaacttgttatagatcattcagtt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33444745 |
agtctcctatggttactatgatcaattgtcgggattaagttgaaaattttggacttactgcatgtaggttccagtggaacttgttatagatcattcggtt |
33444844 |
T |
|
| Q |
119 |
caggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagagagatttggtttccttaaatggggttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444845 |
caggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagagagatttggtttccttaaatggggttcat |
33444944 |
T |
|
| Q |
219 |
ctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggtagataccattgcttaaaatgaaaatcttgctcataaacttgttaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33444945 |
ctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggtagataccattgcttaaaatgaaaatcttgttcataaacttgttaa |
33445044 |
T |
|
| Q |
319 |
ccactacaaaatgtaagttataaatggacttatactatgacattctattgaatttttaggtaaatcttgaataccttggaagagtagtttttaacaacga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445045 |
ccactacaaaatgtaagttataaatggacttatactaagacattctattgaatttttaggtaaatcttgaataccttggaagagtagtttttaacaacga |
33445144 |
T |
|
| Q |
419 |
tggcattctctaccctgacagtgtgatcggtacggactcccacacaccaatgattgatgggttgggaattgctggatggggtgttgggggtattgaagca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445145 |
cggcattctctaccctgacagtgtgatcggtacggactcccacacaccaatgattgatgggttgggaattgctggatggggtgttgggggtattgaagca |
33445244 |
T |
|
| Q |
519 |
gaggcagccatgcttggccaggtaaaatatgttataaaatgtttaggccctgtttgaattagcgatgatttccttccttcttgttttggtgatcataagg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33445245 |
gaggcagccatgcttggccaggtaaaatatgttataaaatgtttaggccctgtttgaattagcgatgatttccttccttctagttttggtgatcataagg |
33445344 |
T |
|
| Q |
619 |
cattgagattcttttctagttttgaatgacagccgatgagtat |
661 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33445345 |
cattgagattcttttctagttttgaatgacagccgatgagtat |
33445387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 542
Target Start/End: Original strand, 37233974 - 37234140
Alignment:
| Q |
376 |
aggtaaatcttgaataccttggaagagtagtttttaacaacgatggcattctctaccctgacagtgtgatcggtacggactcccacacaccaatgattga |
475 |
Q |
| |
|
|||| ||||||||||| |||||| |||| ||||| |||||||| || | ||||| |||||||||||| | || || || ||||| ||| | |||||||| |
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| T |
37233974 |
aggtcaatcttgaatatcttggacgagttgttttcaacaacgagggattactctatcctgacagtgtggttgggactgattcccatacaactatgattga |
37234073 |
T |
|
| Q |
476 |
tgggttgggaattgctggatggggtgttgggggtattgaagcagaggcagccatgcttggccaggta |
542 |
Q |
| |
|
|||| | ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37234074 |
tgggcttggagtcgctggatggggtgttgggggtattgaagcagaggcagcaatgcttggccaggta |
37234140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 376 - 542
Target Start/End: Complemental strand, 28311220 - 28311054
Alignment:
| Q |
376 |
aggtaaatcttgaataccttggaagagtagtttttaacaacgatggcattctctaccctgacagtgtgatcggtacggactcccacacaccaatgattga |
475 |
Q |
| |
|
|||| ||||||||||| |||||| |||| ||||| |||||||| || | ||||| |||||||||||| | || || || ||||| ||| | |||||||| |
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|
| T |
28311220 |
aggtcaatcttgaatatcttggacgagttgttttcaacaacgagggattactctatcctgacagtgtggttgggactgattcccatacaactatgattga |
28311121 |
T |
|
| Q |
476 |
tgggttgggaattgctggatggggtgttgggggtattgaagcagaggcagccatgcttggccaggta |
542 |
Q |
| |
|
|||| | ||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
28311120 |
tgggcttggagtcgctggatggggtgttgggggtattgaagcagaggcatcaatgcttggccaggta |
28311054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 28311485 - 28311318
Alignment:
| Q |
107 |
gatcattcagttcaggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagagagatttggtttcctta |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| || || ||| | || |||||||||| || || || ||||| ||| ||| |||| |
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|
| T |
28311485 |
gatcattcagttcaagttgatgtagcaaggtcagagaatgcagtgcaggctaatatggagcttgagttccagagaaacaaggagaggttttcttttctta |
28311386 |
T |
|
| Q |
207 |
aatggggttcatctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggta |
274 |
Q |
| |
|
||||||| || |||||||| ||| | || |||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
28311385 |
aatgggggtccactgctttccgtaatatgctcgttgttcctcctggttctggtatagtacaccaggta |
28311318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 37233709 - 37233876
Alignment:
| Q |
107 |
gatcattcagttcaggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagagagatttggtttcctta |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| || || ||| | || |||||||||| || || || ||||| ||| ||| |||| |
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|
| T |
37233709 |
gatcattcagttcaagttgatgtagcaaggtcagagaatgcagtgcaggctaatatggagcttgagttccagagaaacaaggagaggttttcttttctta |
37233808 |
T |
|
| Q |
207 |
aatggggttcatctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggta |
274 |
Q |
| |
|
||||||| || |||||||| ||| | || |||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
37233809 |
aatgggggtccactgctttccgtaatatgctcgttgttcctcctggttctggtatagtacaccaggta |
37233876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 92 - 273
Target Start/End: Original strand, 9093150 - 9093331
Alignment:
| Q |
92 |
gtggaacttgttatagatcattcagttcaggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagaga |
191 |
Q |
| |
|
||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||| || || |||||| | ||| |||| ||||| ||||| || || | |
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|
| T |
9093150 |
gtggatcttgtcattgatcactctgttcaggttgatgtagcaagatcagaaaatgctgttcaggcaaatatggaacttgaattccagaggaacaaggaaa |
9093249 |
T |
|
| Q |
192 |
gatttggtttccttaaatggggttcatctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggt |
273 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||| | |||| |||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
9093250 |
gatttggtttcctcaaatggggttcaaatgcgttcaacaacatgcttgttgttcctcctggatcaggaatagtccatcaggt |
9093331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 545
Target Start/End: Original strand, 9093552 - 9093638
Alignment:
| Q |
459 |
cacacaccaatgattgatgggttgggaattgctggatggggtgttgggggtattgaagcagaggcagccatgcttggccaggtaaaa |
545 |
Q |
| |
|
|||||| | ||||||||||| ||||| ||||||| ||||| ||||| || |||||||| || || || |||||||||||||||||| |
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|
| T |
9093552 |
cacacaactatgattgatggcttgggtgttgctgggtggggagttggtggaattgaagccgaagctgcaatgcttggccaggtaaaa |
9093638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 376 - 542
Target Start/End: Complemental strand, 17042175 - 17042009
Alignment:
| Q |
376 |
aggtaaatcttgaataccttggaagagtagtttttaacaacgatggcattctctaccctgacagtgtgatcggtacggactcccacacaccaatgattga |
475 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||||| || ||| | ||||| |||||||||||| | || || || || || ||| | ||||| || |
|
|
| T |
17042175 |
aggtcaatcttgaatatcttggacgggtagttttcaacaatgagggcttactctatcctgacagtgtggttgggactgattcacatacaactatgataga |
17042076 |
T |
|
| Q |
476 |
tgggttgggaattgctggatggggtgttgggggtattgaagcagaggcagccatgcttggccaggta |
542 |
Q |
| |
|
|||| | || ||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||| |
|
|
| T |
17042075 |
tgggcttggtgttgctggatggggtgttggaggtatcgaagctgaggcagcaatgcttggtcaggta |
17042009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 17042435 - 17042271
Alignment:
| Q |
110 |
cattcagttcaggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaaggaataaagagagatttggtttccttaaat |
209 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| |||||||| || || ||| | ||| |||| ||||| || || || |||||||||| ||| ||||||| |
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|
| T |
17042435 |
cattcagttcaagttgatgtggcaaggtcagaaaatgcagtgcaggctaatatggaacttgaattccagagaaacaaggagagatttgcttttcttaaat |
17042336 |
T |
|
| Q |
210 |
ggggttcatctgctttcgataacacacttgttgttcctcctggatctggaatagtccaccaggta |
274 |
Q |
| |
|
|||| ||| |||| ||| ||||| || |||||||||||||| ||||| ||||| || |||||| |
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|
| T |
17042335 |
ggggatcaactgcattccgtaacatgctcgttgttcctcctggttctggtatagtacatcaggta |
17042271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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