View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4218_low_6 (Length: 515)
Name: NF4218_low_6
Description: NF4218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4218_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 45127130 - 45127611
Alignment:
| Q |
19 |
aaagggcatcttgcaacatcagattgttcaggaaaggcagggattgttcattttgaagatgaagattgatttggtttgagtggttgaactgttgctgcat |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
45127130 |
aaagggcatcttgcaacatcagcttgttcaggaaaggcagggattgttccttgtaaagatgaagatggatttggtgtgagtggttgaactgttgctgcat |
45127229 |
T |
|
| Q |
119 |
caggtattgggatagtgataggtagagacagatagaaaggaatgaataagatgagaagaagggtattgaaagatggtagtgtcagtgtcatgatgtataa |
218 |
Q |
| |
|
|||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127230 |
cagggatagggatagggataggtagagacagatagcaaggaatgaataagatgagaagaagggtattgaaagatggtagtgtcagtgtcatgatgtataa |
45127329 |
T |
|
| Q |
219 |
taagagagaagagtgtgagtgaa------------gtgaatgtgaatgtgaatgtggttttcttcttcaatgaaaggnnnnnnnnnnnnnnnngagatat |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45127330 |
taagagagaagagtgtgagtgaagtgaatgtgaatgtgaatgtgaatgtgaatgtggttttcttcttcaatgaaagg--aaaaaagaaaagaagagatat |
45127427 |
T |
|
| Q |
307 |
gggtgtggtagccccctgtattgggacagaactcacaagcaaaggaaagggaaagggaaaataaaggtggtgtgggtgtggggttctgcaaagtttggca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127428 |
gggtgtggtagccccctgtattgggacagaactcacaagcaaaggaaagggaaagggaaaataaaggtggtgtgggtgtggggttctgcaaagtttggca |
45127527 |
T |
|
| Q |
407 |
ccatgctatgatatgctatgctaccaccactgtaaatcaaagttatttattaatagtaattagttatgcggaagaaaagaattt |
490 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127528 |
ctatgctatgatatgctatgctaccaccactgtaaatcaaagttatttattaatagtaattagttatgcggaagaaaagaattt |
45127611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University