View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4219_high_2 (Length: 419)

Name: NF4219_high_2
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4219_high_2
NF4219_high_2
[»] chr5 (3 HSPs)
chr5 (45-376)||(11178889-11179217)
chr5 (373-419)||(2740270-2740316)
chr5 (367-415)||(6679688-6679736)
[»] chr2 (3 HSPs)
chr2 (373-419)||(41575133-41575179)
chr2 (373-419)||(7465793-7465839)
chr2 (375-415)||(33436209-33436249)
[»] chr1 (1 HSPs)
chr1 (373-419)||(51898741-51898787)
[»] chr8 (1 HSPs)
chr8 (375-419)||(37038477-37038521)
[»] chr3 (1 HSPs)
chr3 (376-419)||(27714949-27714992)
[»] scaffold1268 (1 HSPs)
scaffold1268 (377-419)||(987-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (377-419)||(987-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (365-415)||(4017-4067)
[»] chr6 (1 HSPs)
chr6 (365-415)||(29857815-29857865)
[»] chr4 (2 HSPs)
chr4 (377-419)||(50526229-50526271)
chr4 (374-419)||(29234303-29234348)
[»] chr7 (1 HSPs)
chr7 (375-419)||(3434560-3434604)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 45 - 376
Target Start/End: Original strand, 11178889 - 11179217
Alignment:
Q  45 ttaataccggattaacttatggaatcattttccaaactcttaagaaacttaagggtgagtcacatggaaatgctactagagcacgagaacaaggagaaga 144  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11178889 ttaataccggcttaacttatggaatcattttccaaactcttaagaaacttaagggtgagtcacatggaaatgctactagtgcacgagaacaaggagaaga 11178988  T
Q  145 aagaaaagaaccaatgaatgaaagttggcgagatgatatttgaaacgacaaatgtatgggtaaagagagaaactggattgaggatgttgtatttatatgg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11178989 aagaaaagaaccaatgaatgaaagttggcgagatgatatttgaaacgacaaatgtatgggtaaagagagaaactggattgaggatgttgtatttatatgg 11179088  T
Q  245 aaaaaggaggaggttggggcgtaaagtgtgagggaaaatgtttgtggggcctattttgaggtatatcatggggtgagaatggatgagtttttatgtgatt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||| ||||||||    
T  11179089 aaaaaggaggaggttggggcgtaaagtgtgagggaaaatgtttgtggggcctattttgaggtat---atgtggtgagaatggatgagttttgatgtgatt 11179185  T
Q  345 tggatcatcacaattacaactcatttatttta 376  Q
    ||||||||||||||||||||||||||||||||    
T  11179186 tggatcatcacaattacaactcatttatttta 11179217  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 2740270 - 2740316
Alignment:
Q  373 tttagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  2740270 tttagagtaatgatacatagacatccttaggtggcaatacacccttt 2740316  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 6679688 - 6679736
Alignment:
Q  367 atttattttagagtaatgatacatagatatctttagatggtaatacacc 415  Q
    |||| ||||||||| |||||||||||| |||||||| ||| ||||||||    
T  6679688 attttttttagagttatgatacatagacatctttaggtggcaatacacc 6679736  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 41575133 - 41575179
Alignment:
Q  373 tttagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||    
T  41575133 tttaaagtaatgatacatagacatccttagatggtaatacacccttt 41575179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Complemental strand, 7465839 - 7465793
Alignment:
Q  373 tttagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||||||| | | |||||||| ||||||||||||    
T  7465839 tttagagtaatgatacatagacacccttagatggcaatacacccttt 7465793  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 33436209 - 33436249
Alignment:
Q  375 tagagtaatgatacatagatatctttagatggtaatacacc 415  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  33436209 tagagtaatgatacatagacatccttagatggcaatacacc 33436249  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 419
Target Start/End: Complemental strand, 51898787 - 51898741
Alignment:
Q  373 tttagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  51898787 tttagagtaatgatacatagacatctttaggtggcaatacacccttt 51898741  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 37038477 - 37038521
Alignment:
Q  375 tagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||    
T  37038477 tagagtaatgatacatagacatctttaggtggcaatacacccttt 37038521  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 27714992 - 27714949
Alignment:
Q  376 agagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    |||||||||||||||||| | |||||| ||||||||||||||||    
T  27714992 agagtaatgatacatagacacctttaggtggtaatacacccttt 27714949  T

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Target: scaffold1268 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 1029 - 987
Alignment:
Q  377 gagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

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Target: scaffold1267 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 1029 - 987
Alignment:
Q  377 gagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 4017 - 4067
Alignment:
Q  365 tcatttattttagagtaatgatacatagatatctttagatggtaatacacc 415  Q
    |||||| |||| ||||||||||||||||| | |||||||||| ||||||||    
T  4017 tcattttttttggagtaatgatacatagacacctttagatggcaatacacc 4067  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 29857815 - 29857865
Alignment:
Q  365 tcatttattttagagtaatgatacatagatatctttagatggtaatacacc 415  Q
    |||||| |||| ||||||||||||||||| | |||||||||| ||||||||    
T  29857815 tcattttttttggagtaatgatacatagacacctttagatggcaatacacc 29857865  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 50526271 - 50526229
Alignment:
Q  377 gagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacacccttt 50526229  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 29234348 - 29234303
Alignment:
Q  374 ttagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    |||||||||||||||||||| | | |||||||| ||||||||||||    
T  29234348 ttagagtaatgatacatagacacccttagatggcaatacacccttt 29234303  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 3434560 - 3434604
Alignment:
Q  375 tagagtaatgatacatagatatctttagatggtaatacacccttt 419  Q
    ||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  3434560 tagagtaatgatacatagacatccttaggtggcaatacacccttt 3434604  T

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