View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_high_4 (Length: 337)
Name: NF4219_high_4
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 24793270 - 24793575
Alignment:
| Q |
13 |
tcatcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatcaggaacaccaccatgaaaatttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24793270 |
tcatcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatcaggaacaccaccatgaaaatttg |
24793369 |
T |
|
| Q |
113 |
ttgaaccaagattaagatattgcaaactagtactcaaatttccaatatcattaggaataataccatcaaaattgttcatagaaagatctaagtaaacaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24793370 |
ttgaaccaagattaagatattgcaaactagtactcaaatttccaatatcattaggaataataccatcaaaattgttcatagaaagatctaagtaaacaag |
24793469 |
T |
|
| Q |
213 |
ctttgaacaattatagaatagtgttggaaaatcaccagggatgaagttggaactgaagtcaacatgtgtaaggcttttgagttcatcacaaataaaaggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24793470 |
ctttgaacaattatagaatagtgttggaaaatcaccagggatgaagttggaactgaagtcaacatgtgtaaggcttttgagttcatcacaaataaagggt |
24793569 |
T |
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| Q |
313 |
ggtatt |
318 |
Q |
| |
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|||||| |
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| T |
24793570 |
ggtatt |
24793575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 31118520 - 31118448
Alignment:
| Q |
16 |
tcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccat |
88 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| ||||||||||| |||| |
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| T |
31118520 |
tcagaaacagtactattcaataaacaatattgaattataagttctcttaattcctttaactttccaattccat |
31118448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 7361721 - 7361847
Alignment:
| Q |
67 |
tccttcaactttccaatcccatcaggaacaccaccatgaaaatttgttgaaccaagattaaga---tattgcaaactagtactcaaatttccaatatcat |
163 |
Q |
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|||||||||||||||| | || ||||||||||||| |||||||||| |||||| ||||||| ||||| ||| ||||| ||||||||| ||||||| |
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| T |
7361721 |
tccttcaactttccaaatctatgaggaacaccaccagtaaaatttgttaaaccaaaattaagaaaatattgaaaattagtattcaaatttcatatatcat |
7361820 |
T |
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| Q |
164 |
taggaataataccatcaaaattgttca |
190 |
Q |
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| T |
7361821 |
taggaataataccatcaaaattgttca |
7361847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 42660283 - 42660210
Alignment:
| Q |
16 |
tcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
89 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||| |||| || ||||| ||||||||||| ||||| |
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| T |
42660283 |
tcagaaacagtactattcaataaacaatattgaattataagttctcctaattcctttaactttccaattccatc |
42660210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 42662142 - 42662215
Alignment:
| Q |
16 |
tcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
89 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
42662142 |
tcagaaacagtgttattcaataaacaatattgaattataagttctcttaattcctttaactttccaattccatc |
42662215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 50053629 - 50053702
Alignment:
| Q |
16 |
tcagaaacagtaccattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
89 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| || |||||||| ||||| |
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| T |
50053629 |
tcagaaacagtactattcaataaacaatattgaattataagttctcttaattcctttaattttccaattccatc |
50053702 |
T |
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