View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_low_1 (Length: 644)
Name: NF4219_low_1
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 44691989 - 44691502
Alignment:
| Q |
19 |
aagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaatttgagaacaatgcacggagtatcatagagtactgaaagt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44691989 |
aagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaattttagaacaatgcacggagtatcatagagtactgaaagt |
44691890 |
T |
|
| Q |
119 |
ggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44691889 |
ggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgatacctaataaaaattatcctggccaa |
44691790 |
T |
|
| Q |
219 |
agagaaagtatatccaagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctc |
318 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||||| |
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| T |
44691789 |
agagaaagtatatccatgtgattgataagcatggaatggcatgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggtctc |
44691690 |
T |
|
| Q |
319 |
acatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttt |
418 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44691689 |
acatttgatatccaattgttgaacccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcaccttt |
44691590 |
T |
|
| Q |
419 |
tcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgc |
506 |
Q |
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| T |
44691589 |
tcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaatattccccattttcttttcactgc |
44691502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 133 - 604
Target Start/End: Complemental strand, 44682193 - 44681727
Alignment:
| Q |
133 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
232 |
Q |
| |
|
||||||||||||||| ||||||||| | | || ||||||| |||||||| |||||||||||| |||| || || ||||| |||| | ||||||||| | |
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| T |
44682193 |
aaagagataaccatatttaagaaaacacaaagaaatcaaattaacatagtaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44682097 |
T |
|
| Q |
233 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
332 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||| |
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| T |
44682096 |
-atgttattgataagcatggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatcca |
44682002 |
T |
|
| Q |
333 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
432 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44682001 |
attgttgtacccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44681902 |
T |
|
| Q |
433 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaacattatcaacaca- |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||| | ||||| |||| |
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| T |
44681901 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcactgcaatgcttgaaaata-tatcagcacat |
44681803 |
T |
|
| Q |
532 |
---gaataaaaattgcaaagtatgaggatgataattttatcatgcaagaaattcaaatcatttcatataaacactt |
604 |
Q |
| |
|
|||| | | | |||| ||||||||||| |||| ||||||||||||| ||||||||||| | |||||||||| |
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|
| T |
44681802 |
catcaatacagaatacaaattatgaggatgagaattgtatcatgcaagaatttcaaatcattccgaataaacactt |
44681727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 518
Target Start/End: Complemental strand, 44653179 - 44652802
Alignment:
| Q |
133 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
232 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||| |||| || || ||||| |||| | ||||||||| | |
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|
| T |
44653179 |
aaagagataaccatatttaagaaaacacaaaggaatcaaattaacatagcaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44653083 |
T |
|
| Q |
233 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
332 |
Q |
| |
|
| || |||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44653082 |
-atgttattggtaagcatggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatcca |
44652988 |
T |
|
| Q |
333 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
432 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44652987 |
attgttgtacccgaagagagagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44652888 |
T |
|
| Q |
433 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaa |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
44652887 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcactgcaatgcttcaaaa |
44652802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 132 - 513
Target Start/End: Complemental strand, 44631713 - 44631319
Alignment:
| Q |
132 |
gaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaatta--------tcctggccatagaga |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||| || || |
|
|
| T |
44631713 |
gaaagagataaccatagttaagaaaacatatagaaatcaaaataacatagcaccaggatgacacctaataaaaatgaaaataaaatcctagccagagcga |
44631614 |
T |
|
| Q |
224 |
aagtatatccaagtgattga--------taagcat--ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttg |
313 |
Q |
| |
|
|||||||| | || ||||| || |||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
44631613 |
aagtatat--atgttattgacttattggtatgcataaggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttg |
44631519 |
T |
|
| Q |
314 |
gtctcacatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagca |
413 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44631518 |
gtctcacattttatatccaattgttgtagccgaagggagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagca |
44631419 |
T |
|
| Q |
414 |
ccttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgttt |
513 |
Q |
| |
|
||| ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
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|
| T |
44631418 |
cctcttcaaattttccaaaaccttctctcatagccaccgtagactgatcaacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgttt |
44631319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 241 - 518
Target Start/End: Original strand, 44637251 - 44637528
Alignment:
| Q |
241 |
tgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgt |
340 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
44637251 |
tgataatcatggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgt |
44637350 |
T |
|
| Q |
341 |
agccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctt |
440 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
44637351 |
agccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctt |
44637450 |
T |
|
| Q |
441 |
tcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaa |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
44637451 |
tcatagccactgtagattgatcaacttgcacacaacacaaaagattccccattttcttttaactgcaacatttcaaaa |
44637528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 44637055 - 44637114
Alignment:
| Q |
19 |
aagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaa |
78 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
44637055 |
aagacattatcctacaagcaaataaatattaaaccaatcaacattaattcattggaaaaa |
44637114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 44631846 - 44631785
Alignment:
| Q |
19 |
aagacattatcctgcaagcaaataaatatt-aaacaaatcaacatttattccatggaaaaat |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| |||| || ||||||| |
|
|
| T |
44631846 |
aagacattatcctgcaagcaaataaatattaaaaccaatcaacattaattcaatcgaaaaat |
44631785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 17531176 - 17531232
Alignment:
| Q |
22 |
acattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| || |||| ||||||||| |
|
|
| T |
17531176 |
acattatcctgcaagcaaataaatattaaaccagtcaaccttaattcaatggaaaaa |
17531232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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