View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4219_low_2 (Length: 460)
Name: NF4219_low_2
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 8624432 - 8624794
Alignment:
| Q |
11 |
cacagatccaggtactattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8624432 |
cacagatccaggtactattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctatt |
8624531 |
T |
|
| Q |
111 |
gaggatgcttttgttgttaaccttggagatcatggtcatgtgagtatatatattaattgattattaaccactaactaacttgataaaaaacctcccaaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8624532 |
gaggatgcttttgttgttaaccttggagatcatggtcatgtgagtatatatattaattgattattaaccactaactaacttgataaaaaaactcccaaac |
8624631 |
T |
|
| Q |
211 |
actatcttaaagatgggtattggtcatctactcatccatgttttatgacagagattaatactccgtagatatataaaatactcgtttaaatttagatcaa |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8624632 |
actatcttaaagat-ggtattggtcatctactcatccatgttttatgacagagattaatactccgtagatatataaaatactcgtttaaatttagatcaa |
8624730 |
T |
|
| Q |
311 |
tcaatcttgattagatgatctttaccatagcatggaaatataccttacatgcttcgtctaacat |
374 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8624731 |
ccaatcttgatcagatgatctttaccatagcatggaaatataccttacatgcttcgtctaacat |
8624794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32068310 - 32068178
Alignment:
| Q |
24 |
actattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgaggatgcttttg |
123 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||| ||||||||||||| ||| ||||||| |||||||| ||| || |||| ||||| | |||||||| |
|
|
| T |
32068310 |
actattactctattgcttcaagaccaagtgggtggtcttcaagctacaagagataatggtaagacatggatcactgttaagccaattgaaggtgcttttg |
32068211 |
T |
|
| Q |
124 |
ttgttaaccttggagatcatggtcatgtgagta |
156 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |
|
|
| T |
32068210 |
ttgtcaatattggagatcatggtcatgtgagta |
32068178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32091641 - 32091509
Alignment:
| Q |
24 |
actattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgaggatgcttttg |
123 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| ||||||| |||||||| ||| |||| || |||| | |||||||| |
|
|
| T |
32091641 |
actattactctattgcttcaagaccaagtgggtggtcttcaagctaccaaagataatggtaagacatggatcactgttcaaccagttgaaggtgcttttg |
32091542 |
T |
|
| Q |
124 |
ttgttaaccttggagatcatggtcatgtgagta |
156 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |
|
|
| T |
32091541 |
ttgttaatcttggagaccatggtcatgtgagta |
32091509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 3951686 - 3951723
Alignment:
| Q |
388 |
ttgcatcatgcacaagtgtcatttttaccattagatca |
425 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
3951686 |
ttgcatcatgcacaagtatcttttttaccattagatca |
3951723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 20268794 - 20268745
Alignment:
| Q |
388 |
ttgcatcatgcacaagtgtcatttttaccattagatcagtaaatcatatc |
437 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
20268794 |
ttgcatcgtgcacaagtgtcttttttaccatatgatcaataaatcatatc |
20268745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University