View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_low_4 (Length: 365)
Name: NF4219_low_4
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 38142226 - 38142570
Alignment:
| Q |
18 |
ataacacagtcaggtaagtcgctgagtctgtcttcattttcactttcgtcgagcttaactctcttggtcgctggctgaatgatcatctcatccactgaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38142226 |
ataacacagtcaggtaagtcgctgagtctgtcttcattttcactttcgtcgagcttaactctcttggtcgctggctgaatgattatctcatccactgaat |
38142325 |
T |
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| Q |
118 |
aagacattaagactataatacctaataatcaatcataaaaagaagagttaaataagtttttcatcc---------atagcgaattttgattttagtcctt |
208 |
Q |
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| T |
38142326 |
aagacattaagactataatacctaataatcaatcataaaaagaagagttacataagtttttcatccataaaaaatatagcaaattttgattttagtcctt |
38142425 |
T |
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| Q |
209 |
aaaaaataaaacagataataacatggacatacaagagttggccgcaatatatggacataacttgaacacatattgaacatnnnnnnngttataatattga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||| |
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| T |
38142426 |
aaaaaataaaacagataataacatggacatacaagagttggccgcaatatatggacataacttgaacataaa---aa---------agttataatattga |
38142513 |
T |
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| Q |
309 |
cattaatatgaaaataaaatggccattattatttttggaaggatatcccgttatatt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142514 |
cattaatatgaaaataaaatggccattattatttttggaaggatatcccgttatatt |
38142570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 5521562 - 5521527
Alignment:
| Q |
184 |
atagcgaattttgattttagtccttaaaaaataaaa |
219 |
Q |
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| T |
5521562 |
atagcgaattttgattttagtccttaaaaaataaaa |
5521527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 3978089 - 3978058
Alignment:
| Q |
27 |
tcaggtaagtcgctgagtctgtcttcattttc |
58 |
Q |
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| T |
3978089 |
tcaggtaagtcgctgagtctgtcttcattttc |
3978058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 24789684 - 24789716
Alignment:
| Q |
188 |
cgaattttgattttagtccttaaaaaataaaac |
220 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24789684 |
cgaaatttgattttagtccttaaaaaataaaac |
24789716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 24818575 - 24818543
Alignment:
| Q |
188 |
cgaattttgattttagtccttaaaaaataaaac |
220 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24818575 |
cgaaatttgattttagtccttaaaaaataaaac |
24818543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 33414351 - 33414315
Alignment:
| Q |
184 |
atagcgaattttgattttagtccttaaaaaataaaac |
220 |
Q |
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| T |
33414351 |
atagcgaattttgattttaatccctaaaaaataaaac |
33414315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 51203253 - 51203285
Alignment:
| Q |
187 |
gcgaattttgattttagtccttaaaaaataaaa |
219 |
Q |
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| T |
51203253 |
gcgaattttgattttagtccctaaaaaataaaa |
51203285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 30218962 - 30219002
Alignment:
| Q |
296 |
gttataatattgacattaatatgaaaataaaatggccatta |
336 |
Q |
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| T |
30218962 |
gttataattttgacatttatatgaaaataaaatggccatta |
30219002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 17642658 - 17642622
Alignment:
| Q |
184 |
atagcgaattttgattttagtccttaaaaaataaaac |
220 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
17642658 |
atagcgaattttgattttagtccttaaaaaattaaac |
17642622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 51108018 - 51107988
Alignment:
| Q |
191 |
attttgattttagtccttaaaaaataaaaca |
221 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51108018 |
attttgattttagtccttaaaaaataaaaca |
51107988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 33310004 - 33309968
Alignment:
| Q |
184 |
atagcgaattttgattttagtccttaaaaaataaaac |
220 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |
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| T |
33310004 |
atagcgaatttttattttagtccctaaaaaataaaac |
33309968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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