View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_low_5 (Length: 344)
Name: NF4219_low_5
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 30826547 - 30826334
Alignment:
| Q |
15 |
gaactctgaaaaggaaaggctttcaattgccatgttccatgggctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacacca |
114 |
Q |
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| T |
30826547 |
gaactctgaaaaggaaaggctttcaattgccattttccatggcctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacacca |
30826448 |
T |
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| Q |
115 |
ccacggtttaaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgtaaacttgaaggaaagtcattcattgatgacatgagattagatcatc |
214 |
Q |
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| T |
30826447 |
ccacggtttaaaaaagttggagtagaggaatacttaaaaaaattctttgctcgtaaacttgacggaaagtcattcattgatgacatgagattagatcatc |
30826348 |
T |
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| Q |
215 |
acgattgaacttga |
228 |
Q |
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| T |
30826347 |
atgattgaatttga |
30826334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 30834135 - 30833930
Alignment:
| Q |
23 |
aaaaggaaaggctttcaattgccatgttccatgggctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacaccaccacggtt |
122 |
Q |
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| T |
30834135 |
aaaaggaaaggctttcaattgctacattccacagcttgaatcaagatggtattgtaggtcctttggagagcttaatcactgaagaaacaccacctcggtt |
30834036 |
T |
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| Q |
123 |
taaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgtaaacttgaaggaaagtcattcattgatgacatgagattagatcatcacgattga |
222 |
Q |
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| T |
30834035 |
caaaaaagttggagtagatgaatactttaagaacttctttgctcgtaaacttgaaggaaaggccttcatcgatgacatgagaatagagcatgatgattga |
30833936 |
T |
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| Q |
223 |
acttga |
228 |
Q |
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| |||| |
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| T |
30833935 |
atttga |
30833930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 30825806 - 30825735
Alignment:
| Q |
257 |
gttatgtttggccccgtcttccattgtattttctctttatttatatatgatataatattaggagtatgtttg |
328 |
Q |
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| T |
30825806 |
gttatgtttggccccgtcttctattgtattttctctttatttatatatgatataatattaggagtatgtttg |
30825735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 30839702 - 30839549
Alignment:
| Q |
70 |
agtattgtaggtccaatggagagcttgattactgaaaaaacaccaccacggtttaaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgta |
169 |
Q |
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|||||| ||||||| || | ||||| ||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| || |||||||||| |
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| T |
30839702 |
agtattttaggtcctgtgaaaagcttaattactgaacaaacaccagctcggttcaaaaaagttggagtagaggagtacttcaccaacttatttgctcgta |
30839603 |
T |
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| Q |
170 |
aacttgaaggaaagtcattcattgatgacatgagattagatcatcacgattgaa |
223 |
Q |
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||||||| |||||||||| |||||||| |||||| |||| ||| ||||||||| |
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| T |
30839602 |
aacttgagggaaagtcatacattgatgttatgagaatagaacatgacgattgaa |
30839549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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