View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4219_low_7 (Length: 322)

Name: NF4219_low_7
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4219_low_7
NF4219_low_7
[»] chr1 (11 HSPs)
chr1 (22-308)||(3299775-3300062)
chr1 (22-294)||(43067663-43067938)
chr1 (22-294)||(43044053-43044328)
chr1 (22-294)||(43082897-43083172)
chr1 (205-307)||(43079856-43079958)
chr1 (22-74)||(43077540-43077592)
chr1 (24-71)||(45984647-45984694)
chr1 (223-295)||(38139007-38139079)
chr1 (22-71)||(38138812-38138861)
chr1 (22-71)||(7891904-7891953)
chr1 (97-137)||(43079762-43079802)
[»] chr4 (2 HSPs)
chr4 (25-293)||(4230525-4230790)
chr4 (234-307)||(19965623-19965696)
[»] chr6 (2 HSPs)
chr6 (22-79)||(7520674-7520731)
chr6 (22-71)||(7530211-7530260)
[»] chr8 (2 HSPs)
chr8 (208-307)||(4618729-4618826)
chr8 (21-71)||(4618968-4619018)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 3300062 - 3299775
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaa-caaagtcagcattgaagaagaagtgaacc 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3300062 cgtcagactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaaacaaagtcagcattgaagaagaagtgaacc 3299963  T
Q  121 gtgcaggaagatctatccaaggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgtttttcg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299962 gtgcaggaagatctatccaaggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgtttttcg 3299863  T
Q  221 gattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttcttttc 308  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299862 gattaagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttcttttc 3299775  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 43067663 - 43067938
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaacaaagtcagcattgaagaagaagtgaaccg 121  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||||||||||||||    
T  43067663 cgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccg 43067762  T
Q  122 tgcaggaagatctatcca---aggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgttttt 218  Q
     |||||| |||||||| |    |||||  ||| || || ||||||| ||||||| |    |   ||||| || ||||| | |||| ||| ||||||||||    
T  43067763 agcaggatgatctatctacttgggaagcatatcatagttattacaataaatggtctttggtccttagtatttctatttctagtctagtttacttgttttt 43067862  T
Q  219 cggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 294  Q
    |  ||||||||||||||||||||  |||||||  | ||||||||| || ||||||||||| |||||||||||||||    
T  43067863 catattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcag 43067938  T

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Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 43044328 - 43044053
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaacaaagtcagcattgaagaagaagtgaaccg 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||||||||||||||    
T  43044328 cgtcaaactgtggctgttggggtcatcaaggctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccg 43044229  T
Q  122 tgcaggaagatctat---ccaaggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgttttt 218  Q
     |||||| |||||||   |   |||||  ||| || || ||||||| ||||||| |    |   ||||| || ||||| || ||| ||| ||||||||||    
T  43044228 agcaggatgatctatttacttgggaagcatatcatagttattacaataaatggtctttggtccttagtatttctatttctcttctagtttacttgttttt 43044129  T
Q  219 cggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 294  Q
    |  ||||||||||||||||||||  |||||||  | ||| ||||| || ||||||||||| |||||||||||||||    
T  43044128 catattaagtgtcaagtctgcaccttcatctcttagcttgtgttctcagaactgggttctagatcgacggtggcag 43044053  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 43083172 - 43082897
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaacaaagtcagcattgaagaagaagtgaaccg 121  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||  | || |||||||||||||||||||||||||| |    
T  43083172 cgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaactg 43083073  T
Q  122 tgcaggaagatctatcca---aggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgttttt 218  Q
     |||||| | |||||| |    |||||  ||| || || ||||||| ||||||| |    |   ||||| || ||||| |||||| ||| ||||||||||    
T  43083072 agcaggatggtctatctacttgggaagcatatcatagttattacaataaatggtcttgggtccttagtatttctatttctcgtctagtttacttgttttt 43082973  T
Q  219 cggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 294  Q
    |  ||||||||||||||||||||  |||||||  | ||||||||| || ||||||||||| |||||||||||||||    
T  43082972 catattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcag 43082897  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 43079856 - 43079958
Alignment:
Q  205 gttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttct 304  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||  | ||||||||  |||||| |||||| |||| |||||    
T  43079856 gttaacttgtttttcagattaagtgtcaagtctgcaccgtcgtctcgcagcccttgttcccaggattgggttctatatcgactgtggcaaggctttttct 43079955  T
Q  305 ttt 307  Q
    |||    
T  43079956 ttt 43079958  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 43077540 - 43077592
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccag 74  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  43077540 cgtcaaactgtggctgttggtgtcatcacggctgtggagtagaaggatcccag 43077592  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 45984647 - 45984694
Alignment:
Q  24 tcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 71  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  45984647 tcaaactgtggctgttggagtcatcaaggctgtgaagaagaaggatcc 45984694  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 38139007 - 38139079
Alignment:
Q  223 ttaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagg 295  Q
    ||||||||||||||||||| |||||||| || |||||||||| | |||||| |||| ||| || |||||||||    
T  38139007 ttaagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggcagg 38139079  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 38138812 - 38138861
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 71  Q
    |||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  38138812 cgtcaaactgtggctgttggagtcatcatggttgtgaagaagaaggatcc 38138861  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 7891904 - 7891953
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 71  Q
    ||||||||||||||| |||| |||||||||| |||| |||| ||||||||    
T  7891904 cgtcaaactgtggctattggagtcatcaaggatgtgaagaataaggatcc 7891953  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 43079762 - 43079802
Alignment:
Q  97 tcagcattgaagaagaagtgaaccgtgcaggaagatctatc 137  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  43079762 tcagcattgaagaataagggaaccgtgcaggatgatctatc 43079802  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 4230790 - 4230525
Alignment:
Q  25 caaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggaggacttaataaaacaaagtcagcattgaagaagaagtgaaccgtgc 124  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||  ||  ||    ||| | ||| |||||||||   |||||||| ||||||||||    
T  4230790 caaactgtggctgttggggttatcaagggtgtggagaagaaggaacctggcacagc---taagataactaagtcagcagccaagaagaaatgaaccgtgc 4230694  T
Q  125 aggaagatctatccaaggaagtctattatggtgattacaagaaatggtttgctctatgtagtacttttatttttcgtcttgttaacttgtttttcggatt 224  Q
    |||| ||| |  |   |||||| |||  | || ||||||| ||||||||||   |   ||||| || |||||   |||||||||| |||||||| |||||    
T  4230693 aggatgattttccttgggaagtttatagtcgttattacaataaatggtttgtggttcttagtatttctatttcgtgtcttgttaagttgttttttggatt 4230594  T
Q  225 aagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggca 293  Q
    |||||| |||||||||| |||||||| || |||||||||||| ||||||||||| ||||||||||||||    
T  4230593 aagtgtgaagtctgcaccgtcatctcccagcttttgttcccagaactgggttctagatcgacggtggca 4230525  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 19965623 - 19965696
Alignment:
Q  234 gtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttctttt 307  Q
    |||||||||||  ||| ||| |||| ||||||| |||||| |||| ||||||| |||||||||| |||||||||    
T  19965623 gtctgcactgttgtcttgcagctttcgttcccagaactggcttctagatcgacagtggcagggccatttctttt 19965696  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 7520674 - 7520731
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcccagcggag 79  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  7520674 cgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaaggatcccaccggag 7520731  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 7530211 - 7530260
Alignment:
Q  22 cgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 71  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7530211 cgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaaggatcc 7530260  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 4618826 - 4618729
Alignment:
Q  208 aacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttctttt 307  Q
    |||||||||| | | ||||||||||||||||||||||||| ||  |  ||||||||| | |||| |||||| ||| ||| ||||||||||||||||||||    
T  4618826 aacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttt 4618729  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 4619018 - 4618968
Alignment:
Q  21 acgtcaaactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 71  Q
    ||||| ||| ||||||||||| ||||| ||||||||| |||||||||||||    
T  4619018 acgtcgaacagtggctgttggagtcattaaggctgtgaagaagaaggatcc 4618968  T

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