View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_low_8 (Length: 305)
Name: NF4219_low_8
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 36474443 - 36474730
Alignment:
| Q |
5 |
cacatcaaatgaagcatctgtgttacatttaaaacaagggctttttccacctaatagcagcctgcaatctgctgtccgcaccagacctggtgttagcttc |
104 |
Q |
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| T |
36474443 |
cacatcaaatgaagcatctgtgttacatttaaaacaagggctttttccacctaatagcagcctgcaatctgctgtccgcaccagacctggtgttagcttc |
36474542 |
T |
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| Q |
105 |
attagcaggtttttgagtgagctgccaattcaacaaaatctgtcttccttgcgtaacaacctgtgtatgcgtctcttgaacgttatcccagactcgcttg |
204 |
Q |
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| T |
36474543 |
attagcaggtttttgcatgagctgccaattcaacaaaagctgtcttccttgcgtaaaaacctgtgtatgcgtctcttgaacgttatcccagactcgcttg |
36474642 |
T |
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| Q |
205 |
ctacgctgctgccaaatactccacattaccccccaaaaaacgctgcgttctgagctgaaactgtacactgaaagcttgtgcacaggtt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36474643 |
ctacgctgctgccaaatactccacattaccccccaaaaaacgctgcgttctgagctgaaactgtacactgaaagcttgtgcacaggtt |
36474730 |
T |
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