View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4219_low_9 (Length: 286)
Name: NF4219_low_9
Description: NF4219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4219_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 16407955 - 16408207
Alignment:
| Q |
20 |
caacaacactaaagaaaaattataaactaatcacttttaacatccatcgtttgcatcctgtnnnnnnnnnnnnnnnnntctacccatcaagtaaccaatg |
119 |
Q |
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| T |
16407955 |
caacaacactaaagaaaaattataaactaatcacttttaacatccatcgtttgcatcctgtaaaaaaaaataaaaa--tctacccatcaagtaaccaatg |
16408052 |
T |
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| Q |
120 |
aataaaaacaactcaaaagcgttggannnnnnncacttccgacgatgatgaatttgttattttttatcaactttgaatttgttattttaattaataaata |
219 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16408053 |
aataaaaacaactcaaaagcgttggatttttttcccttccgacgatgatgaatttgttattttttatcaactttgaatttgttattttaattaataaata |
16408152 |
T |
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| Q |
220 |
gatgnnnnnnntgggagggaatagtgcgcagaaggtgcatagtaactgtgatgat |
274 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16408153 |
gatgaaaaaaatgggagggaatagtgcgcagaaggtgcatagtaactgtgatgat |
16408207 |
T |
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