View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4220_low_1 (Length: 824)
Name: NF4220_low_1
Description: NF4220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4220_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 20 - 814
Target Start/End: Original strand, 10561432 - 10562226
Alignment:
| Q |
20 |
cctttgacagaacctctttcctaattgaatttttgcttcctttttcttgatggagctcggtggcattgtttctttccgttttggagccaagttttcgaag |
119 |
Q |
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| T |
10561432 |
cctttgacagaacctctttcctaattgaatttttgcttcctttttcttgatggagctcggtagcattgtttctttccgttttggagccaagttttcgaag |
10561531 |
T |
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| Q |
120 |
cccttcagcagtagtctctttcggttcaaaacagtcattatcaatggaatcttcctgagtcatatcttgtagtggaaaggaatccattaaatgttgacaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10561532 |
cccttcagcagtagtctctttcggttcaaaacagtcattatcaatggaatcttcctgagtcatatcttgtagtagaaaggaatccattaaatgttgacaa |
10561631 |
T |
|
| Q |
220 |
ggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaagtcaatggaacgttttgcatgaagaaatgtttctatatcaaaacctaact |
319 |
Q |
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| T |
10561632 |
ggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaaatcaatggaacgttttgcatgaagaaatgtttctatatcaaaacctaact |
10561731 |
T |
|
| Q |
320 |
tgtcaacaattgagattctatctatgagatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagccaaccttctgaaatatgaaggattag |
419 |
Q |
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| T |
10561732 |
tgtcaacaattgagattctatctatgatatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagccaaccttctgaaatatgaaggattag |
10561831 |
T |
|
| Q |
420 |
ccgatcaacattcttcccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattttttattcctttggcaaactcgtcg |
519 |
Q |
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| T |
10561832 |
ccgatcaacattctccccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattttttattcctttggcaaactcgtcg |
10561931 |
T |
|
| Q |
520 |
cacaaattctccaaaagtattcgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagattttacttcagaaagctcacaagcaagcc |
619 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561932 |
cacaaattctccaaaagtatttgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagattttacttcagaaagctcacaagcaagcc |
10562031 |
T |
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| Q |
620 |
tctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagtttgaattctatcatgttctttatt |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10562032 |
tctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagtttgaattctatcatgttctttatt |
10562131 |
T |
|
| Q |
720 |
cttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgtattaactccttcatctgtg |
814 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10562132 |
cttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgtattaactccttcatctgtg |
10562226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 48234363 - 48234311
Alignment:
| Q |
280 |
cgttttgcatgaagaaatgtttctatatcaaaacctaacttgtcaacaattga |
332 |
Q |
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||||||||||||||||||||||| ||||||| | |||||||||||| ||||| |
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| T |
48234363 |
cgttttgcatgaagaaatgtttcaatatcaatgcgtaacttgtcaactattga |
48234311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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