View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4220_low_4 (Length: 252)
Name: NF4220_low_4
Description: NF4220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4220_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 4015722 - 4015586
Alignment:
| Q |
9 |
cacagacacgaaacccttcgctcttaacaataatcacgaagaacacaatctgtattccgggatatcacgttgaacataaggaagaattcagcatcgttag |
108 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4015722 |
cacagacacgaaactcttcgctcttaaaaataatcacgaagaacacaatctgtattccgggatatcacgttgaacataaggaagaattcagcatcgttag |
4015623 |
T |
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| Q |
109 |
acaccctatacatcgtgtattccaaaaccattccttc |
145 |
Q |
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| T |
4015622 |
acaccctatacatcgtgtattccaaaaccattccttc |
4015586 |
T |
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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 4015520 - 4015434
Alignment:
| Q |
151 |
gatagttgattcctgtaatggattgcttcttttggaagttgtttctaaaactgtttatggttttgagtactggctctgtgtttggaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4015520 |
gatagttgattcctgtaatggattgcttcttttggaagttgtttctgaaactgtttatggttttgagtactggctctgtgtttggaa |
4015434 |
T |
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