View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4222_high_2 (Length: 353)

Name: NF4222_high_2
Description: NF4222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4222_high_2
NF4222_high_2
[»] chr2 (4 HSPs)
chr2 (90-223)||(39253942-39254074)
chr2 (288-343)||(39253822-39253877)
chr2 (1-46)||(20120711-20120757)
chr2 (1-29)||(13196725-13196753)
[»] chr5 (4 HSPs)
chr5 (1-33)||(34206252-34206284)
chr5 (2-46)||(27679524-27679569)
chr5 (1-33)||(24485724-24485756)
chr5 (1-29)||(27903138-27903166)
[»] chr7 (3 HSPs)
chr7 (7-46)||(31151902-31151941)
chr7 (1-46)||(45425478-45425524)
chr7 (1-29)||(30463379-30463407)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-46)||(17529-17575)
[»] chr8 (8 HSPs)
chr8 (1-46)||(44146748-44146794)
chr8 (1-29)||(4830033-4830061)
chr8 (1-29)||(7679927-7679955)
chr8 (1-29)||(8717483-8717511)
chr8 (1-29)||(12714378-12714406)
chr8 (1-29)||(29924925-29924953)
chr8 (1-29)||(32192919-32192947)
chr8 (1-29)||(37141382-37141410)
[»] chr1 (4 HSPs)
chr1 (1-46)||(38448856-38448902)
chr1 (1-46)||(19533169-19533214)
chr1 (1-29)||(27533268-27533296)
chr1 (1-29)||(44678025-44678053)
[»] chr6 (3 HSPs)
chr6 (1-29)||(8629704-8629732)
chr6 (1-29)||(26356089-26356117)
chr6 (1-45)||(33938671-33938715)
[»] chr4 (3 HSPs)
chr4 (1-29)||(22040675-22040703)
chr4 (1-29)||(28435256-28435284)
chr4 (1-29)||(34042265-34042293)
[»] chr3 (6 HSPs)
chr3 (1-29)||(8957969-8957997)
chr3 (1-29)||(10926494-10926522)
chr3 (1-29)||(21331425-21331453)
chr3 (1-29)||(39779049-39779077)
chr3 (1-29)||(45334214-45334242)
chr3 (1-29)||(52119401-52119429)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 39254074 - 39253942
Alignment:
Q  90 aaatataagatccacttaacattgagttttaagtgagaccttagatctttaagttcccaaaaaatttcctccccaatgggagtgcggatctgctccagtt 189  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39254074 aaatataaggtccacttaacattgagttttaagtgagatcttagat-tttaagttcccaaaaaatttcctccccaatgggagtgcggatctgctccagtt 39253976  T
Q  190 ttcctgtttacttgaccgatgtatgacacgtggc 223  Q
    ||||||||||||| ||||||||||||||||||||    
T  39253975 ttcctgtttacttcaccgatgtatgacacgtggc 39253942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 39253877 - 39253822
Alignment:
Q  288 caacaattagctttcctcttttcgttacctaatcttcttctttaccctcttctctg 343  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39253877 caacaattagctttcctcttttcgttacccaatcttcttctttaccctcttctctg 39253822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20120757 - 20120711
Alignment:
Q  1 caatgcataatatatgcaaggttcgggg-tcgaattccggacaccac 46  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||    
T  20120757 caatgcataatatatgcaaggttcggggttcaaatcccggacaccac 20120711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13196725 - 13196753
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  13196725 caatgcataatatatgcaaggttcggggt 13196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34206252 - 34206284
Alignment:
Q  1 caatgcataatatatgcaaggttcggggtcgaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  34206252 caatgcataatatatgcaaggttcggggtcgaa 34206284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27679524 - 27679569
Alignment:
Q  2 aatgcataatatatgcaaggttcgggg-tcgaattccggacaccac 46  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||    
T  27679524 aatgcataatatatgcaaggttcggggttcaaatcccggacaccac 27679569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24485724 - 24485756
Alignment:
Q  1 caatgcataatatatgcaaggttcggggtcgaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  24485724 caatgcataatatatgcaaggttcgggttcgaa 24485756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27903138 - 27903166
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  27903138 caatgcataatatatgcaaggttcggggt 27903166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 31151941 - 31151902
Alignment:
Q  7 ataatatatgcaaggttcggggtcgaattccggacaccac 46  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  31151941 ataatatatgcaaggtttgggttcgaattccggacaccac 31151902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45425478 - 45425524
Alignment:
Q  1 caatgcataatatatgcaaggttcgggg-tcgaattccggacaccac 46  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||    
T  45425478 caatgcataatatatgcaaggttcggggttcgaatcccggccaccac 45425524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30463407 - 30463379
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  30463407 caatgcataatatatgcaaggttcggggt 30463379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17529 - 17575
Alignment:
Q  1 caatgcataatatatgcaaggttcgggg-tcgaattccggacaccac 46  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||    
T  17529 caatgcataatatatgcaaggtttggggttcgaatcccggacaccac 17575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44146748 - 44146794
Alignment:
Q  1 caatgcataatatatgcaaggttcg-gggtcgaattccggacaccac 46  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||    
T  44146748 caatgcataatatatgcaaggttcgaggttcgaattccggtcaccac 44146794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4830033 - 4830061
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  4830033 caatgcataatatatgcaaggttcggggt 4830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7679927 - 7679955
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  7679927 caatgcataatatatgcaaggttcggggt 7679955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8717511 - 8717483
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  8717511 caatgcataatatatgcaaggttcggggt 8717483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12714406 - 12714378
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  12714406 caatgcataatatatgcaaggttcggggt 12714378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29924953 - 29924925
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  29924953 caatgcataatatatgcaaggttcggggt 29924925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32192919 - 32192947
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  32192919 caatgcataatatatgcaaggttcggggt 32192947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37141382 - 37141410
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  37141382 caatgcataatatatgcaaggttcggggt 37141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38448902 - 38448856
Alignment:
Q  1 caatgcataatatatgcaaggttcgggg-tcgaattccggacaccac 46  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  38448902 caatgcataatatatgcaaggtccggggttcgaatcccggacaccac 38448856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19533214 - 19533169
Alignment:
Q  1 caatgcataatatatgcaaggttcggggtcgaattccggacaccac 46  Q
    |||||||||||||||||||| || ||| ||||||||||| ||||||    
T  19533214 caatgcataatatatgcaagatttgggttcgaattccggccaccac 19533169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27533268 - 27533296
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  27533268 caatgcataatatatgcaaggttcggggt 27533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44678053 - 44678025
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  44678053 caatgcataatatatgcaaggttcggggt 44678025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8629732 - 8629704
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  8629732 caatgcataatatatgcaaggttcggggt 8629704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26356117 - 26356089
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  26356117 caatgcataatatatgcaaggttcggggt 26356089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33938715 - 33938671
Alignment:
Q  1 caatgcataatatatgcaaggttcggggtcgaattccggacacca 45  Q
    ||||||||||||||||||||||||||| |  |||||||| |||||    
T  33938715 caatgcataatatatgcaaggttcgggtttaaattccggccacca 33938671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22040675 - 22040703
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  22040675 caatgcataatatatgcaaggttcggggt 22040703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28435284 - 28435256
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  28435284 caatgcataatatatgcaaggttcggggt 28435256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34042265 - 34042293
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  34042265 caatgcataatatatgcaaggttcggggt 34042293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8957969 - 8957997
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  8957969 caatgcataatatatgcaaggttcggggt 8957997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10926494 - 10926522
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  10926494 caatgcataatatatgcaaggttcggggt 10926522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21331453 - 21331425
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  21331453 caatgcataatatatgcaaggttcggggt 21331425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39779049 - 39779077
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  39779049 caatgcataatatatgcaaggttcggggt 39779077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45334214 - 45334242
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  45334214 caatgcataatatatgcaaggttcggggt 45334242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52119401 - 52119429
Alignment:
Q  1 caatgcataatatatgcaaggttcggggt 29  Q
    |||||||||||||||||||||||||||||    
T  52119401 caatgcataatatatgcaaggttcggggt 52119429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University