View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4222_low_4 (Length: 262)
Name: NF4222_low_4
Description: NF4222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4222_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 43055453 - 43055690
Alignment:
| Q |
15 |
cactattgtgttaatatcatcgacttaaatttgaaactaattttttctgcttaagnnnnnnnnaaaatttaaaatttgcatttataaagttgcaatcaca |
114 |
Q |
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| T |
43055453 |
cactattgtgttaatatcatcgacttaaatt-gaaactaattttttctgcttaagttttttttaaaatttaaaatttgcatttataaagttgcaatcaca |
43055551 |
T |
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| Q |
115 |
tgtttttaagtacttannnnnnncttgcaggtactgtttagacggacctgtgatttttaccaaggaagttatatggttatgtgaggattgtgacgaagaa |
214 |
Q |
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| T |
43055552 |
tgtttttaagtacttctttttttcttgcaggtactgtttagacggacctgtgatttttaccgaggaagttatatggttatgtgaggattgtgacgaagaa |
43055651 |
T |
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| Q |
215 |
acaggaccgtgtccaatgactgactctgaaactgatgat |
253 |
Q |
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| T |
43055652 |
acaggaccgtgtccaatgactgactctgaaactgatgat |
43055690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 44805077 - 44805206
Alignment:
| Q |
79 |
aaatttaaaatttgcatttataaagttgcaatcacatgttttt-aagtacttannnnnnncttgcaggtactgtttagacggacctgtgatttttaccaa |
177 |
Q |
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| T |
44805077 |
aaatttaaaattttcatttataaagttgcaatctaatgttctacaagtccttttttctttctttcaggtactgtttagacggacctgtgatttttaccga |
44805176 |
T |
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| Q |
178 |
ggaagttatatggttatgtgaggattgtga |
207 |
Q |
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| T |
44805177 |
tgaagtgatatggttttgtgaggactgtga |
44805206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 11788807 - 11788736
Alignment:
| Q |
142 |
caggtactgtttagacggacctgtgatttttaccaaggaagttatatggttatgtgaggattgtgacgaaga |
213 |
Q |
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| T |
11788807 |
caggtattgtttagacgggcctgtgatttttacggatgaggttatttggtattgtgaggattgtgaagaaga |
11788736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 17543081 - 17543051
Alignment:
| Q |
142 |
caggtactgtttagacggacctgtgattttt |
172 |
Q |
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| T |
17543081 |
caggtactgtttagacggacctgtgattttt |
17543051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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