View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4223_high_1 (Length: 627)
Name: NF4223_high_1
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 25 - 390
Target Start/End: Complemental strand, 29317245 - 29316881
Alignment:
| Q |
25 |
ttaatttgttattctttctttgtgctcagacttgagaagataaagataaaaagtatgcgaagtcaagcaaaggtgttgggaactatagcaactgtttcag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29317245 |
ttaatttgttattctttctttgtgctcagacttgagaagataaagataaaaagtatgcgaagtcaagcaaaggtgttgggaactatagcaactgtttcag |
29317146 |
T |
|
| Q |
125 |
gtgcaatggtgatgacattgatgaaaggtccaatactttttgagacatttggagatcatagccaaagctatcatagcagtggcacaagtgctcatcatac |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29317145 |
gtgcaatggtgatgacactgatgaaaggtccaatactttttgagacatttggagatcatagccaaagctatcatagcagtggcacaagtgctcatcatac |
29317046 |
T |
|
| Q |
225 |
aatacttggatctgtgttgatcactataggatgctttagttgggcttgttttgtgatcctccaggtgagttattttctcccattatttgatactataaaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29317045 |
aatacttggatctgtgttgatcactataggatgctttagttgggcttgttttgtgatcctccaggtgagttattttctcccattatttgatactataaaa |
29316946 |
T |
|
| Q |
325 |
gtttatgggtacattcannnnnnnnggagaaattaaagtgattttaacaatataaacttggtaaaa |
390 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29316945 |
gtttatgggtacattca-tttttttggagaaattaaagtgattttaacaatataaacttggtaaaa |
29316881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 417 - 609
Target Start/End: Complemental strand, 29316857 - 29316669
Alignment:
| Q |
417 |
gctactaatacaacttaatttgtatcttttcctaggctattacccttgaaacctacccagcagcactctcactttcatcatggatatgtctgttcggcgc |
516 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29316857 |
gctactaatacaactt----tgtatcttttcctaggctattacccttgaaacctacccagcagcactctcactttcatcatggatatgtctgttcggcgc |
29316762 |
T |
|
| Q |
517 |
aattgaaggtgcagcactggctttggttatggaaaggaacaacccttcagtttggtccataaaatgggatatgagactattgtctgcaattta |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29316761 |
aattgaaggtgcagcactggctttggttatggaaaggaacaacccttcagtttggtccataaaatgggatatgagactattgtctgcaattta |
29316669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29317329 - 29317301
Alignment:
| Q |
1 |
atatgttattatttttatcacgtgttaat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29317329 |
atatgttattatttttatcacgtgttaat |
29317301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University